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| Status |
Public on Aug 02, 2022 |
| Title |
circRNA sequencing facilitates quantitative analysis of CUS mice hippocampus and Control mice hippocampus |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
The goal of this study is to seek the potential circular RNAs (circRNAs), which express differently between control group and chronic unpredictable stress (CUS) group mouse hippocampus, involved in major dipresssion disorder (MDD) by high-throughput sequencing. QPCR was preformed to identify the circRNAs trend. CircRNAs are a class of RNAs in the eukaryotic transcriptome. The function and explicit downstream mechanisms of circRNA regulated in maior depression disorser remain unclear. To further investigate the potential role of circRNAs in MDD, we performed human and mouse homology screening on circRNA sequences using the Basic Local Alignment Search Tool on the NCBI website. CircSTAG1, a homologous human and mouse circRNA, was found downregulated in circRNA high-throughput sequencing. Our study represents the first detailed analysis of circRNA expressing differently in CUS mouse hippocampus by high-throughput sequencing.
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| Overall design |
CUS induced circular RNA expression in mice hippocampus was measured, and their expression in healthy controls were set as comparison. Three independent samples from CUS group and three independent samples from control group were employed in high-throughput sequencing analysis.
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| Contributor(s) |
Yao H, Huang R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 03, 2019 |
| Last update date |
Aug 02, 2022 |
| Contact name |
Rongrong Huang |
| E-mail(s) |
[email protected]
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| Phone |
15905173096
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| Organization name |
Southeast University
|
| Street address |
87 Dingjiaqiao
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| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
210009 |
| Country |
China |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA558498 |
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