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| Status |
Public on Jun 29, 2022 |
| Title |
Consticted migration is associated with stable 3D genome structure differences in cancer cells (ATAC-Seq) |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We investigated the effect of constricted migration (using transwell assays with 5-μm or 12-μm in diameter) on the organization of the 3D genome in melanoma cells.
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| Overall design |
ATAC-Seq was performed to investigate chromatin accessibility state. This experiment was performed on Control, Top-5 and Bottom-5 cells and only one biological replicates was performed for each condition.
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| Contributor(s) |
Golloshi R, Playter C, Freeman TF, Das P, Raines TI, Garretson JH, Thurston D, McCord RP |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jan 14, 2020 |
| Last update date |
Jun 30, 2022 |
| Contact name |
Rosela Golloshi |
| E-mail(s) |
[email protected]
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| Organization name |
University of Tennessee Knoxville
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| Department |
Department of Biochemistry & Cellular and Molecular Biology
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| Lab |
Rachel Patton McCord Lab
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| Street address |
1311 Cumberland Avenue
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| City |
Knoxville |
| State/province |
TN |
| ZIP/Postal code |
37996 |
| Country |
USA |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE143678 |
Consticted migration is associated with stable 3D genome structure differences in cancer cells |
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| Relations |
| BioProject |
PRJNA601213 |
| SRA |
SRP241949 |
