|
| Status |
Public on Mar 27, 2020 |
| Title |
mRNAs and miRNAs for Women's Healthy Eating and Living (WHEL) Study |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
The nCounter miRGE™ assay was used to quantify transcript expression with a custom codeset containing probes for 123 endogenous mRNAs and 25 miRNAs to assess the association of genomic markers with long-term breast cancer survival.
A total of 1,253 FFPE primary breast cancer samples with high-quality reads were obtained.
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| |
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| Overall design |
We interrogated mRNAs and miRNAs using the Nanostring nCounter miRGE platform with a custom codeset, aiming to investigate if the PAM50 research model could be improved by addition of other mRNAs and miRNAs implicated in oncogenesis using the WHEL breast cancer cohort with >15 years of follow-up and archived tumor specimens.
Refer to https://library.ucsd.edu/dc/object/bb2493244b
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| |
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| Contributor(s) |
Natarajan L, Davies S, Vickery T, Pu M |
| Citation(s) |
31186261, 31542876 |
| |
| Submission date |
Mar 17, 2020 |
| Last update date |
Jun 26, 2020 |
| Contact name |
Loki Natarajan |
| E-mail(s) |
[email protected]
|
| Organization name |
University of California, San Diego
|
| Street address |
3855 Health Sciences DR
|
| City |
La Jolla |
| ZIP/Postal code |
92093-0901 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL28286 |
NanoString nCounter Human miRGE Expression Assay Custom CodeSet [WHEL] |
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| Samples (1253)
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| Relations |
| BioProject |
PRJNA615389 |
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