NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE16081 Query DataSets for GSE16081
Status Public on Aug 19, 2009
Title Gallus gallus bursal FAE and IFE
Organism Gallus gallus
Experiment type Expression profiling by array
Summary A minor population of M cells within the follicle-associated epithelium (FAE) of intestinal Peyer’s patches (PP) serves as a major portal for entry of exogenous antigens. Characterization of the mammalian M cells, including identification of M-cell surface molecules used for bacterial uptake, has been hampered by their relative rarity. In contrast, M cells constitute virtually all of the FAE cells in the avian bursa of Fabricius. We therefore performed comparative gene expression profiling of chicken and murine FAE to identify commonly expressed genes by M cells in both species. The comprehensive transcriptome analysis revealed that 28 genes were commonly up-regulated in FAE from both species. In situ hybridization (ISH) revealed that annexin A10 (Anxa10) mRNA was scattered in FAE, and co-localized with Ulex europaeus agglutinin-1(UEA-1) that binds to M cells. Whole-mount immunostaining also revealed that cellular prion protein (PrPC) was expressed on the luminal side of the apical plasma membrane of M cells, and co-localized with grycoprotein2 (GP2) that recognizes only M cells in murine PP. Taken together, we found new M-cell-specific molecules by using comprehensive transcriptome analysis. These molecules conserved in M cells from both species might play critical roles in M-cell function and/or differentiation.
 
Overall design Bursa of Fabricius were dissected from the rectum and soaked in Hank's Buffered Salt Solution (HBSS) (GIBCO) containing black ink for 5 min at room temperature to visualize FAE. After incubation, the tissue was treated with 40 mM EDTA/25 mM Hepes (pH 7.4) in HBSS for 5min at room temperature to collect bursal FAE or 30 min at 37ºC for bursal IFE. Bursal FAE and IFE were collected with a fine 29G needle under stereomicroscope monitoring (n=2)
 
Contributor(s) Nakato G, Hase K, Fukuda S, Ohno H
Citation(s) 19675110
Submission date May 13, 2009
Last update date Mar 21, 2012
Contact name Shinji Fukuda
E-mail(s) [email protected]
Organization name Keio University
Department Institute for Advanced Biosciences
Lab Microbiome Research Group
Street address 246-2 Mizukami, Kakuganji
City Tsuruoka
State/province Yamagata
ZIP/Postal code 997-0052
Country Japan
 
Platforms (1)
GPL3213 [Chicken] Affymetrix Chicken Genome Array
Samples (4)
GSM402240 Gallus gallus bursal FAE_rep1
GSM402521 Gallus gallus bursal FAE_rep2
GSM402523 Gallus gallus bursal IFE_rep1
Relations
BioProject PRJNA115509

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16081_RAW.tar 14.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap