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Series GSE162792 Query DataSets for GSE162792
Status Public on Jun 07, 2021
Title Nuclear receptor NHR-49 promotes peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary The intracellular level of fatty aldehydes is tightly regulated to minimize the formation of toxic aldehyde adducts of cellular components. Accordingly, deficiency of a fatty aldehyde dehydrogenase FALDH causes the neurologic disorder Sjögren-Larsson syndrome (SLS) in humans. However, cellular responses to unresolved, elevated fatty aldehyde levels are poorly understood. Based on lipidomic and imaging analysis, we report that the loss of endoplasmic reticulum-, mitochondria- and peroxisomes-associated ALH-4, the C. elegans FALDH ortholog, increases fatty aldehyde levels and reduces fat storage. ALH-4 deficiency in the intestine, cell-nonautonomously induces NHR-49/NHR-79-dependent hypodermal peroxisome proliferation. This is accompanied by the upregulation of catalases and fatty acid catabolic enzymes, as indicated by RNA sequencing. Such a response is required to counteract ALH-4 deficiency since alh-4; nhr-49 double mutant animals are not viable. Our work reveals unexpected inter-tissue communication of fatty aldehyde levels, and suggests pharmacological modulation of peroxisome proliferation as a therapeutic strategy for SLS.
 
Overall design RNA-seq with three biological replicates of synchronized wild type N2 and mutant alh-4(-) worms at the L4 stage to determine the differentially expressed genes.
 
Contributor(s)  Zeng L, Preusch CB,  He GJ, Cheung TH, Mak HY
Citation(s) 34237064
Submission date Dec 07, 2020
Last update date Aug 03, 2021
Contact name Ho Yi Mak
E-mail(s) [email protected]
Organization name The Hong Kong University of Science and Technology
Department Division of Life Science
Lab Mak Lab
Street address Clear Water Bay
City Hong Kong
ZIP/Postal code NA
Country China
 
Platforms (1)
GPL19757 Illumina NextSeq 500 (Caenorhabditis elegans)
Samples (6)
GSM4959967 n2_wild_type_rep1
GSM4959968 n2_wild_type_rep2
GSM4959969 n2_wild_type_rep3
Relations
BioProject PRJNA683027
SRA SRP296805

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162792_genes_fpkm.tsv.gz 824.3 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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