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Series GSE164232 Query DataSets for GSE164232
Status Public on Feb 22, 2021
Title Interleukin-11-expressing fibroblasts have a unique gene signature correlated with poor prognosis of colorectal cancer
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Interleukin (IL)-11 is a member of the IL-6 family of cytokines and involved in multiple cellular responses, including tumor development. However, the origin and functions of IL-11-producing (IL-11+) cells are not fully understood. To characterize IL-11+ cells in vivo, we generated Il11 reporter mice. IL-11+ cells appeared in the colon of murine tumor and acute colitis models. Il11ra1 or Il11 deletion attenuated the development of colitis-associated colorectal cancer. IL-11+ cells expressed fibroblast markers, and genes associated with cell proliferation and tissue repair. IL-11 induced the activation of colonic fibroblasts and epithelial cells through phosphorylation of STAT3. Human cancer database analysis revealed that a set of genes enriched in IL-11+ fibroblasts was elevated in human colorectal cancer, and correlated with reduced recurrence-free survival. Together, IL-11+ fibroblasts activate both tumor cells and fibroblasts via secretion of IL-11, thereby constituting a feed forward loop between tumor cells and fibroblasts in the tumor microenvironment.
 
Overall design To characterize IL-11+ fibroblasts that appeared in colitis, we used a cell sorter to isolate EGFP+ and EGFP- fibroblasts from the colon of DSS-treated Il11-Egfp reporter mice and compared their gene expression profiles by RNA-seq analysis.
 
Contributor(s) Nishina T, Nakano H
Citation(s) 33863879
Submission date Feb 19, 2021
Last update date May 13, 2021
Contact name Takashi Nishina
E-mail(s) [email protected]
Phone +81-3-3762-4151
Organization name Toho University
Department Biochemistry
Street address 5-21-16 Omori-nishi
City Ota-ku
State/province Tokyo
ZIP/Postal code 143-8540
Country Japan
 
Platforms (1)
GPL25723 Ion Torrent S5 (Mus musculus)
Samples (6)
GSM5004297 EGFP-Negative_1
GSM5004298 EGFP-Negative_2
GSM5004299 EGFP-Negative_3
This SubSeries is part of SuperSeries:
GSE141644 Characterization of Interleukin 11-producing fibroblasts that constitute a niche for tumor development
Relations
BioProject PRJNA703020

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164232_RAW.tar 470.0 Kb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file

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