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| Status |
Public on Feb 24, 2022 |
| Title |
Analyzing ceRNA networks involved in KSHV lytic replication mediated by vIRF1 or vFLIP. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Whole-transcriptome sequencing (RNA sequencing [RNA-seq]) was performed in the viral producer cell lines iSLK-RGB BAC16,iSLK-RGB-K9 mutant and iSLK-RGB-K13 mutant cells to uncover the global landscape of long non-coding RNAs (lncRNAs), circular RNAs (circRNAs), mRNAs and microRNAs (miRNAs) in KSHV replication mediated by vIRF1 or vFLIP.
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| Overall design |
iSLK-RGB BAC16, iSLK-RGB-K9 mutant and iSLK-RGB-K13 mutant cells were induced with doxycycline for 72 h and then collected for the whole-transcriptome sequencing.
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| Contributor(s) |
Sheng L, Chen Y, Chen C, Li W, Lu C |
| Citation(s) |
35149992 |
| |
| Submission date |
Jul 27, 2021 |
| Last update date |
Feb 24, 2022 |
| Contact name |
Liuxue Sheng |
| E-mail(s) |
[email protected]
|
| Organization name |
Nanjing Medical University
|
| Street address |
Tian Yuan East Road
|
| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
211166 |
| Country |
China |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA750103 |
| SRA |
SRP330275 |
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