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GEO accession:
Series GSE183641
Query DataSets for GSE183641
Status
Public on Mar 29, 2023
Title
Analysis of HAND2 and MYCN
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36598365
,
37781575
Submission date
Sep 07, 2021
Last update date
Oct 19, 2023
Contact name
Jack Shern
Organization name
NCI
Lab
POB
Street address
10 Center drive
City
bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (101)
Less...
More...
GSM5563366
IMR32_SiCTR_Rep1
GSM5563367
IMR32_SiCTR_Rep2
GSM5563368
IMR32_SiCTR_Rep3
GSM5563369
IMR32_SiMYCN_2_Rep1
GSM5563370
IMR32_SiMYCN_2_Rep2
GSM5563371
IMR32_SiMYCN_2_Rep3
GSM5563372
IMR32_SiHAND2_3_Rep1
GSM5563373
IMR32_SiHAND2_3_Rep2
GSM5563374
IMR32_SiHAND2_3_Rep3
GSM5563375
IMR32_SiM2+SiH2_3_Rep1
GSM5563376
IMR32_SiM2+SiH2_3_Rep2
GSM5563377
IMR32_SiM2+SiH2_3_Rep3
GSM5566139
LAN5_SiCTR_Rep1
GSM5566140
LAN5_SiCTR_Rep2
GSM5566141
LAN5_SiCTR_Rep3
GSM5566142
LAN5_SiMYCN_2_Rep1
GSM5566143
LAN5_SiMYCN_2_Rep2
GSM5566144
LAN5_SiMYCN_2_Rep3
GSM5566145
LAN5_SiHAND2_3_Rep1
GSM5566146
LAN5_SiHAND2_3_Rep2
GSM5566147
LAN5_SiHAND2_3_Rep3
GSM5576933
IMR32_11_siCtrl_MYCN_72h
GSM5576934
IMR32_12_siHAND2_MYCN_72h
GSM5576935
IMR32_15_siMYCN_MYCN_72h
GSM5576936
IMR32_16_siMYCN+siHAND2_MYCN_72h
GSM5576937
IMR32_18_siMYCN_Input_72h
GSM5576938
IMR32_20_siMYCN+siHAND2_Input_72h
GSM5576939
IMR32_1_siCtrl_PHOX2B_72h
GSM5576940
IMR32_2_siCtrl_GATA3_ab_72h
GSM5576941
IMR32_4_siHAND2_PHOX2B_72h
GSM5576942
IMR32_5_siHAND2_GATA3_ab_72h
GSM5576943
IMR32_7_siMYCN_HAND2_72h
GSM5576944
IMR32_25_siCtrl_MYCN_3_72h
GSM5576945
IMR32_26_siCtrl_HAND2_3_72h
GSM5576946
IMR32_27_siCtrl_PHOX2B_3_72h
GSM5576947
IMR32_29_siPHOX2B_MYCN_3_72h
GSM5576948
IMR32_30_siPHOX2B_HAND2_3_72h
GSM5576949
IMR32_31_siPHOX2B_PHOX2B_3_72h
GSM5576950
IMR32_33_siGATA3_MYCN_3_72h
GSM5576951
IMR32_34_siGATA3_HAND2_3_72h
GSM5576952
IMR32_35_siGATA3_PHOX2B_3_72h
GSM5576953
IMR32_41_siCtrl_Input_3_72h
GSM5576954
IMR32_42_siPHOX2B_Input_3_72h
GSM5576955
IMR32_43_siGATA3_Input_3_72h
GSM5576956
IMR32_11_siCtrl_GATA3_ab_72h
GSM5576957
IMR32_12_siPHOX2B_GATA3_ab_72h
GSM5576958
IMR32_13_siGATA3_GATA3_ab_72h
GSM5576959
IMR32_25_siCtrl_24h_Input_72h
GSM5576960
IMR32_26_siHAND2_24h_Input_72h
GSM5576961
IMR32_27_siCtrl_MYCN_24h
GSM5576962
IMR32_28_siCtrl_HAND2_24h
GSM5576963
IMR32_29_siCtrl_PHOX2B_24h
GSM5576964
IMR32_30_siCtrl_GATA3ab_24h
GSM5576965
IMR32_31_siHAND2_MYCN_24h
GSM5576966
IMR32_32_siHAND2_HAND2_24h
GSM5576967
IMR32_33_siHAND2_PHOX2B_24h
GSM5576968
IMR32_34_siHAND2_GATA3ab_24h
GSM5576969
IMR32_1_siCtrl_H3K27AC_72h
GSM5576970
IMR32_2_siHAND2_H3K27AC_72h
GSM5576971
IMR32_3_siCtrl_H3K4me3_72h
GSM5576972
IMR32_4_siHAND2_H3K4me3_72h
GSM5576973
IMR32_5_siCtrl_H3K27me3_72h
GSM5576974
IMR32_6_siHAND2_H3K27me3_72h
GSM5576975
IMR32_7_siCtrl_RNA_Pol_II_72h
GSM5576976
IMR32_8_siHAND2_RNA_Pol_II_72h
GSM5576977
IMR32_9_siCtrl_RNA_P_IIS2_72h
GSM5576978
IMR32_10_siHAND2_RNA_P_IIS2_72h
GSM5576979
IMR32_13_siCtrl_HAND2_72h
GSM5576980
IMR32_14_siHAND2_HAND2_72h
GSM5576981
IMR32_17_siCtrl_Input_72h
GSM5576982
IMR32_19_siHAND2_Input_72h
GSM5576983
IMR32tetHAND2_Ctrl_Input_36h
GSM5576984
IMR32tetHAND2_Dox_Input_36h
GSM5576985
IMR32tetHAND2_Ctrl_MYCN_36h
GSM5576986
IMR32tetHAND2_Ctrl_HAND2_36h
GSM5576987
IMR32tetHAND2_Dox_MYCN_36h
GSM5576988
IMR32tetHAND2_Dox_HAND2_36h
GSM5576989
IMR32tetHAND2_Ctrl_Input_6h
GSM5576990
IMR32tetHAND2_Dox_Input_6h
GSM5576991
IMR32tetHAND2_Ctrl_MYCN_6h
GSM5576992
IMR32tetHAND2_Dox_MYCN_6h
GSM5576993
IMR32tetHAND2_Ctrl_HAND2_6h
GSM5576994
IMR32tetHAND2_Dox_HAND2_6h
GSM5582116
IMR32_1_siCtrl_r1
GSM5582117
IMR32_2_siHAND2_r1
GSM5582118
IMR32_3_siMYCN_r1
GSM5582119
IMR32_4_siH_M_r1
GSM5582120
IMR32_5_siCtrl_r2
GSM5582121
IMR32_6_siHAND2_r2
GSM5582122
IMR32_7_siMYCN_r2
GSM5582123
IMR32_8_siH_M_r2
GSM5582124
IMR32_siCtrl_r1
GSM5582125
IMR32_siCtrl_r2
GSM5582126
IMR32_siGATA3_r1
GSM5582127
IMR32_siGATA3_r2
GSM5582128
IMR32_siPHOX2B_r1
GSM5582129
IMR32_siPHOX2B_r2
GSM5582148
IMR32_pTetOne_H2_C_r1
GSM5582149
IMR32_pTetOne_H2_C_r2
GSM5582150
IMR32_pTetOne_H2_T_r1
GSM5582151
IMR32_pTetOne_H2_T_r2
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE183609
RNA-sequencing analysis to investigate genes regulated by HAND2 and MYCN in IMR32 cells
GSE183636
RNA-sequencing analysis to investigate genes regulated by HAND2 and MYCN in LAN5 cells
GSE184057
The cooperation among the core regulatory circuitry transcription factors and MYCN on DNA binding [HAND2-MYCN-CRC-knockdown_ChIPseq]
GSE184058
HAND2 regulates regional chromation modification [HAND2-knockdown_histone_ChIPseq]
GSE184059
The cooperation between HAND2 and MYCN on DNA binding [HAND2-overexpression_ChIPseq]
GSE184229
Investigate the effect of loss of HAND2, MYCN, PHOX2B and GATA3 on chromatin accessibility.
GSE184232
Investigate the effect of gain of HAND2 on chromatin accessibility.
Relations
BioProject
PRJNA761435
Download family
Format
SOFT formatted family file(s)
SOFT
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TXT
Supplementary file
Size
Download
File type/resource
GSE183641_RAW.tar
9.1 Gb
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TAR (of BW)
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