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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 23, 2022 |
| Title |
The dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
36259929 |
| |
| Submission date |
Sep 24, 2021 |
| Last update date |
Nov 23, 2022 |
| Contact name |
Christian Rohde |
| E-mail(s) |
[email protected]
|
| Organization name |
Heidelberg University
|
| Lab |
Molecular Hematology and Oncology
|
| Street address |
Im Neuenheimer Feld 410
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platforms (3) |
| GPL15456 |
Illumina HiScanSQ (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (267)
|
| GSM5596281 |
Kasumi-1 cells, FBL knockdown replicate 1 |
| GSM5596282 |
Kasumi-1 cells, FBL knockdown replicate 2 |
| GSM5596283 |
Kasumi-1 cells, FBL knockdown replicate 3 |
| GSM5596284 |
acute myeloid leukemia (AML)_DR01 |
| GSM5596285 |
acute myeloid leukemia (AML)_DR10 |
| GSM5596286 |
acute myeloid leukemia (AML)_DR11 |
| GSM5596287 |
acute myeloid leukemia (AML)_DR12 |
| GSM5596288 |
acute myeloid leukemia (AML)_DR13 |
| GSM5596289 |
acute myeloid leukemia (AML)_DR14 |
| GSM5596290 |
acute myeloid leukemia (AML)_DR15 |
| GSM5596291 |
acute myeloid leukemia (AML)_DR16 |
| GSM5596292 |
acute myeloid leukemia (AML)_DR17 |
| GSM5596293 |
acute myeloid leukemia (AML)_DR18 |
| GSM5596294 |
acute myeloid leukemia (AML)_DR19 |
| GSM5596295 |
acute myeloid leukemia (AML)_DR02 |
| GSM5596296 |
acute myeloid leukemia (AML)_DR20 |
| GSM5596297 |
acute myeloid leukemia (AML)_DR21 |
| GSM5596298 |
acute myeloid leukemia (AML)_DR22 |
| GSM5596299 |
acute myeloid leukemia (AML)_DR23 |
| GSM5596300 |
acute myeloid leukemia (AML)_DR24 |
| GSM5596301 |
acute myeloid leukemia (AML)_DR26 |
| GSM5596302 |
acute myeloid leukemia (AML)_DR27 |
| GSM5596303 |
acute myeloid leukemia (AML)_DR28 |
| GSM5596304 |
acute myeloid leukemia (AML)_DR29 |
| GSM5596305 |
acute myeloid leukemia (AML)_DR03 |
| GSM5596306 |
acute myeloid leukemia (AML)_DR31 |
| GSM5596307 |
acute myeloid leukemia (AML)_DR32 |
| GSM5596308 |
acute myeloid leukemia (AML)_DR33 |
| GSM5596309 |
acute myeloid leukemia (AML)_DR34 |
| GSM5596310 |
acute myeloid leukemia (AML)_DR35 |
| GSM5596311 |
acute myeloid leukemia (AML)_DR36 |
| GSM5596312 |
acute myeloid leukemia (AML)_DR37 |
| GSM5596313 |
acute myeloid leukemia (AML)_DR38 |
| GSM5596314 |
acute myeloid leukemia (AML)_DR39 |
| GSM5596315 |
acute myeloid leukemia (AML)_DR04 |
| GSM5596316 |
acute myeloid leukemia (AML)_DR40 |
| GSM5596317 |
acute myeloid leukemia (AML)_DR41 |
| GSM5596318 |
acute myeloid leukemia (AML)_DR42 |
| GSM5596319 |
acute myeloid leukemia (AML)_DR43 |
| GSM5596320 |
acute myeloid leukemia (AML)_DR44 |
| GSM5596321 |
acute myeloid leukemia (AML)_DR45 |
| GSM5596322 |
acute myeloid leukemia (AML)_DR46 |
| GSM5596323 |
acute myeloid leukemia (AML)_DR47 |
| GSM5596324 |
acute myeloid leukemia (AML)_DR48 |
| GSM5596325 |
acute myeloid leukemia (AML)_DR49 |
| GSM5596326 |
acute myeloid leukemia (AML)_DR05 |
| GSM5596327 |
acute myeloid leukemia (AML)_DR50 |
| GSM5596328 |
acute myeloid leukemia (AML)_DR51 |
| GSM5596329 |
acute myeloid leukemia (AML)_DR52 |
| GSM5596330 |
acute myeloid leukemia (AML)_DR53 |
| GSM5596331 |
acute myeloid leukemia (AML)_DR54 |
| GSM5596332 |
acute myeloid leukemia (AML)_DR55 |
| GSM5596333 |
acute myeloid leukemia (AML)_DR56 |
| GSM5596334 |
acute myeloid leukemia (AML)_DR57 |
| GSM5596335 |
acute myeloid leukemia (AML)_DR58 |
| GSM5596336 |
acute myeloid leukemia (AML)_DR59 |
| GSM5596337 |
acute myeloid leukemia (AML)_DR60 |
| GSM5596338 |
acute myeloid leukemia (AML)_DR61 |
| GSM5596339 |
acute myeloid leukemia (AML)_DR62 |
| GSM5596340 |
acute myeloid leukemia (AML)_DR64 |
| GSM5596341 |
acute myeloid leukemia (AML)_DR65 |
| GSM5596342 |
acute myeloid leukemia (AML)_DR67 |
| GSM5596343 |
acute myeloid leukemia (AML)_DR68 |
| GSM5596344 |
acute myeloid leukemia (AML)_DR07 |
| GSM5596345 |
acute myeloid leukemia (AML)_DR70 |
| GSM5596346 |
acute myeloid leukemia (AML)_DR71 |
| GSM5596347 |
acute myeloid leukemia (AML)_DR72 |
| GSM5596348 |
acute myeloid leukemia (AML)_DR73 |
| GSM5596349 |
acute myeloid leukemia (AML)_DR74 |
| GSM5596350 |
acute myeloid leukemia (AML)_DR75 |
| GSM5596351 |
acute myeloid leukemia (AML)_DR76 |
| GSM5596352 |
acute myeloid leukemia (AML)_DR77 |
| GSM5596353 |
acute myeloid leukemia (AML)_DR78 |
| GSM5596354 |
acute myeloid leukemia (AML)_DR79 |
| GSM5596355 |
acute myeloid leukemia (AML)_DR80 |
| GSM5596356 |
acute myeloid leukemia (AML)_DR82 |
| GSM5596357 |
acute myeloid leukemia (AML)_DR83 |
| GSM5596358 |
acute myeloid leukemia (AML)_DR84 |
| GSM5596359 |
acute myeloid leukemia (AML)_DR85 |
| GSM5596360 |
acute myeloid leukemia (AML)_DR86 |
| GSM5596361 |
acute myeloid leukemia (AML)_DR87 |
| GSM5596362 |
acute myeloid leukemia (AML)_DR88 |
| GSM5596363 |
acute myeloid leukemia (AML)_DR89 |
| GSM5596364 |
acute myeloid leukemia (AML)_DR09 |
| GSM5596365 |
acute myeloid leukemia (AML)_DR90 |
| GSM5596366 |
acute myeloid leukemia (AML)_DR91 |
| GSM5596367 |
acute myeloid leukemia (AML)_DR92 |
| GSM5596368 |
acute myeloid leukemia (AML)_DR93 |
| GSM5596369 |
acute myeloid leukemia (AML)_DR94 |
| GSM5596370 |
acute myeloid leukemia (AML)_DR95 |
| GSM5596371 |
acute myeloid leukemia (AML)_DR96 |
| GSM5596372 |
acute myeloid leukemia (AML)_DR98 |
| GSM5596373 |
acute myeloid leukemia (AML)_DR99 |
| GSM5596389 |
Kasumi-1 cells, FBL knockdown replicate 1 |
| GSM5596390 |
Kasumi-1 cells, FBL knockdown replicate 2 |
| GSM5596391 |
Kasumi-1 cells, FBL knockdown plus FBLTri mutant replicate 1 |
| GSM5596392 |
Kasumi-1 cells, FBL knockdown plus FBLTri mutant replicate 2 |
| GSM5596393 |
Kasumi-1 cells, FBL knockdown plus empty replicate 1 |
| GSM5596394 |
Kasumi-1 cells, FBL knockdown plus empty replicate 2 |
| GSM5596395 |
Kasumi-1 cells, FBL knockdown plus FBLQuamutant replicate 1 |
| GSM5596396 |
Kasumi-1 cells, FBL knockdown plus FBLQua mutant replicate 2 |
| GSM5596397 |
Kasumi-1 cells, FBL knockdown plus wildtype FBL replicate 1 |
| GSM5596398 |
Kasumi-1 cells, FBL knockdown plus wildtype FBL replicate 2 |
| GSM5596399 |
Kasumi-1 cells, Control knockdown replicate 1 |
| GSM5596400 |
Kasumi-1 cells, Control knockdown replicate 2 |
| GSM5596401 |
Kasumi-1 cells, Control knockdown plus empty replicate 1 |
| GSM5596402 |
Kasumi-1 cells, Control knockdown plus empty replicate 2 |
| GSM5596403 |
Kasumi-1 cells, SNORD127 knockout clone C1 |
| GSM5596404 |
Kasumi-1 cells, SNORD127 knockout clone C1 plus empty |
| GSM5596405 |
Kasumi-1 cells, SNORD127 knockout clone C1 plus SNORD127 |
| GSM5596406 |
Kasumi-1 cells, SNORD127 control knockout clone |
| GSM5596407 |
Kasumi-1 cells, SNORD127 knockout clone C34 |
| GSM5596424 |
AML, 02H053 |
| GSM5596425 |
AML, 03H041 |
| GSM5596426 |
AML, 03H116 |
| GSM5596427 |
AML, 04H112 |
| GSM5596428 |
AML, 05H050 |
| GSM5596429 |
AML, 05H094 |
| GSM5596430 |
AML, 05H181 |
| GSM5596431 |
AML, 06H028 |
| GSM5596432 |
AML, 06H135 |
| GSM5596433 |
AML, 09H043 |
| GSM5596434 |
AML, 09H115 |
| GSM5596435 |
AML, 10H056 |
| GSM5596436 |
AML, 10H101 |
| GSM5596437 |
AML, 11H006 |
| GSM5596438 |
AML, 11H009 |
| GSM5596439 |
AML, 11H095 |
| GSM5596440 |
AML, 11H129 |
| GSM5596441 |
AML, 11H142 |
| GSM5596442 |
AML_subpopulation, 119CD34negativeCD38positive |
| GSM5596443 |
AML_subpopulation, 119CD34positiveCD38negative |
| GSM5596444 |
AML_subpopulation, 119CD34positiveCD38positive |
| GSM5596445 |
AML_subpopulation, 145CD34negativeCD38positive |
| GSM5596446 |
AML_subpopulation, 145CD34positiveCD38negative |
| GSM5596447 |
AML_subpopulation, 145CD34positiveCD38positive |
| GSM5596448 |
B Cell, CD191 |
| GSM5596449 |
B Cell, CD193 |
| GSM5596450 |
B Cell, CD195 |
| GSM5596451 |
T cell, CD31 |
| GSM5596452 |
T cell, CD32 |
| GSM5596453 |
T cell, CD33 |
| GSM5596454 |
HSPC, CD34s1 |
| GSM5596455 |
HSPC, CD34s10 |
| GSM5596456 |
HSPC, CD34s11 |
| GSM5596457 |
HSPC, CD34s12 |
| GSM5596458 |
HSPC, CD34s2 |
| GSM5596459 |
T cell, CD35 |
| GSM5596460 |
AML, DR01 |
| GSM5596461 |
AML, DR02 |
| GSM5596462 |
AML, DR03 |
| GSM5596463 |
AML, DR04 |
| GSM5596464 |
AML, DR05 |
| GSM5596465 |
AML, DR06 |
| GSM5596466 |
AML, DR07 |
| GSM5596467 |
AML, DR08 |
| GSM5596468 |
AML, DR09 |
| GSM5596469 |
AML, DR10 |
| GSM5596470 |
AML, DR11 |
| GSM5596471 |
AML, DR12 |
| GSM5596472 |
AML, DR13 |
| GSM5596473 |
AML, DR14 |
| GSM5596474 |
AML, DR15 |
| GSM5596475 |
AML, DR16 |
| GSM5596476 |
AML, DR17 |
| GSM5596477 |
AML, DR18 |
| GSM5596478 |
AML, DR19 |
| GSM5596479 |
AML, DR20 |
| GSM5596480 |
AML, DR21 |
| GSM5596481 |
AML, DR22 |
| GSM5596482 |
AML, DR23 |
| GSM5596483 |
AML, DR25 |
| GSM5596484 |
AML, DR26 |
| GSM5596485 |
AML, DR27 |
| GSM5596486 |
AML, DR28 |
| GSM5596487 |
AML, DR29 |
| GSM5596488 |
AML, DR30 |
| GSM5596489 |
AML, DR31 |
| GSM5596490 |
AML, DR32 |
| GSM5596491 |
AML, DR33 |
| GSM5596492 |
AML, DR34 |
| GSM5596493 |
AML, DR36 |
| GSM5596494 |
AML, DR38 |
| GSM5596495 |
AML, DR39 |
| GSM5596496 |
AML, DR40 |
| GSM5596497 |
AML, DR41 |
| GSM5596498 |
AML, DR42 |
| GSM5596499 |
AML, DR43 |
| GSM5596500 |
AML, DR44 |
| GSM5596501 |
AML, DR46 |
| GSM5596502 |
AML, DR47 |
| GSM5596503 |
AML, DR48 |
| GSM5596504 |
AML, DR49 |
| GSM5596505 |
AML, DR50 |
| GSM5596506 |
AML, DR51 |
| GSM5596507 |
AML, DR52 |
| GSM5596508 |
AML, DR53 |
| GSM5596509 |
AML, DR54 |
| GSM5596510 |
AML, DR55 |
| GSM5596511 |
AML, DR56 |
| GSM5596512 |
AML, DR57 |
| GSM5596513 |
AML, DR58 |
| GSM5596514 |
AML, DR59 |
| GSM5596515 |
AML, DR60 |
| GSM5596516 |
AML, DR61 |
| GSM5596517 |
AML, DR62 |
| GSM5596518 |
AML, DR64 |
| GSM5596519 |
AML, DR65 |
| GSM5596520 |
AML, DR66 |
| GSM5596521 |
AML, DR67 |
| GSM5596522 |
AML, DR68 |
| GSM5596523 |
AML, DR69 |
| GSM5596524 |
AML, DR70 |
| GSM5596525 |
AML, DR71 |
| GSM5596526 |
AML, DR72 |
| GSM5596527 |
AML, DR73 |
| GSM5596528 |
AML, DR74 |
| GSM5596529 |
AML, DR75 |
| GSM5596530 |
AML, DR76 |
| GSM5596531 |
AML, DR77 |
| GSM5596532 |
AML, DR78 |
| GSM5596533 |
AML, DR79 |
| GSM5596534 |
AML, DR80 |
| GSM5596535 |
AML, DR81 |
| GSM5596536 |
AML, DR82 |
| GSM5596537 |
AML, DR83 |
| GSM5596538 |
AML, DR84 |
| GSM5596539 |
AML, DR85 |
| GSM5596540 |
AML, DR86 |
| GSM5596541 |
AML, DR87 |
| GSM5596542 |
AML, DR88 |
| GSM5596543 |
AML, DR89 |
| GSM5596544 |
AML, DR90 |
| GSM5596545 |
AML, DR91 |
| GSM5596546 |
AML, DR92 |
| GSM5596547 |
AML, DR93 |
| GSM5596548 |
AML, DR94 |
| GSM5596549 |
AML, DR95 |
| GSM5596550 |
AML, DR96 |
| GSM5596551 |
AML, DR97 |
| GSM5596552 |
AML, DR98 |
| GSM5596553 |
AML, DR99 |
| GSM5596554 |
Granulocyte, Granulocyte2 |
| GSM5596555 |
Granulocyte, Granulocyte3 |
| GSM5596556 |
Granulocyte, Granulocyte4 |
| GSM5596557 |
Granulocyte, Granulocyte5 |
| GSM5596558 |
AML_subpopulation, HD57CD34negCD38pos |
| GSM5596559 |
AML_subpopulation, HD57CD34posCD38neg |
| GSM5596560 |
AML_subpopulation, HD57CD34posCD38pos |
| GSM5596561 |
AML_subpopulation, HD72CD34negCD38pos |
| GSM5596562 |
AML_subpopulation, HD72CD34posCD38neg |
| GSM5596563 |
AML_subpopulation, HD72CD34posCD38pos |
| GSM5596564 |
AML_subpopulation, HD77CD34negCD38pos |
| GSM5596565 |
AML_subpopulation, HD77CD34posCD38neg |
| GSM5596566 |
AML_subpopulation, HD77CD34posCD38pos |
| GSM5596567 |
Monocyte, Monocyte1 |
| GSM5596568 |
Monocyte, Monocyte2 |
| GSM5596569 |
Monocyte, Monocyte3 |
| GSM5596570 |
Monocyte, Monocyte4 |
| GSM5596571 |
Monocyte, Monocyte5 |
| GSM5616112 |
FBL knockdown replicate 1 |
| GSM5616113 |
FBL knockdown replicate 2 |
| GSM5616114 |
Control knockdown replicate 1 |
| GSM5616115 |
Control knockdown replicate 2 |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE184721 |
The dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia [mRNA_FBL_KD] |
| GSE184722 |
The dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia [mRNA_primary_samples] |
| GSE184724 |
The dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia [ribomethseq_FBL_KD] |
| GSE184727 |
The dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia [ribomethseq_primary_samples] |
| GSE185489 |
The dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia [ribosome profiling] |
|
| Relations |
| BioProject |
PRJNA765949 |
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