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| Status |
Public on Mar 24, 2010 |
| Title |
Mock or latently infected KSHV cells (BCBL, SLK and HFF) |
| Platform organisms |
Homo sapiens; Human herpesvirus 8 type M |
| Sample organisms |
Homo sapiens; Human gammaherpesvirus 8; Human herpesvirus 8 strain rKSHV.219 |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
[original title] Mock or latently infected KSHV cells (BCBL, SLK and HFF) vs common reference (mixture of RNA from both infected and uninfected cells).
Expression profiling of latently infected cells using a custom tiling microarray.
SLK and HFF cells were infected and selected for rKSHV.219. Mock infected SLK and HFF cells served as controls for each of these two stably infected cells, respectively. BJAB cells served as uninfected controls for the BCBL-1 cells. Biological replicates were harvested and analyzed.
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| |
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| Overall design |
Two condition experiment: mock infected vs. latently infected cells. Three cell types.
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| |
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| Contributor(s) |
Chandriani S, Ganem D |
| Citation(s) |
20219929 |
| |
| Submission date |
Feb 22, 2010 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Sanjay Chandriani |
| E-mail(s) |
[email protected]
|
| Organization name |
UCSF
|
| Street address |
513 Parnassus Avenue
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL10083 |
KSHV tiling microarray AMADID: 017577 |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA125033 |
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