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Series GSE207715 Query DataSets for GSE207715
Status Public on Jul 28, 2024
Title Extracellular vesicles miR-574-5p and miR-181a-5p as prognostic markers in NSCLC patients treated with nivolumab
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary Plasma from 245 patients with advanced NSCLC who received nivolumab as second-line therapy was collected and analyzed. EV-miRnome was profiled on 174/245 patients by microarray platform and selected EV-miRs were validated by qPCR. A prognostic model combining EV-miR and clinical variables was built using stepwise Cox regression analysis and tested on an independent patient cohort (71/245). EV-PD-L1 gene copy number was assessed by digital PCR. For 54 patients with disease control, EV-miR changes at best response versus baseline were investigated by microarray and validated by qPCR.
EV-miRNome profiling at baseline identified two EV-miR (miR-181a-5p, miR-574-5p) that, combined with performance status, are capable of discriminating patients unlikely from those that are likely to benefit from immunotherapy (median overall survival of 4 months or higher than 9 months, respectively).
EV-PD-L1 digital evaluation reported higher baseline copy number in patients at increased mortality risk, without improving the prognostic score. Best response EV-miRNome profiling selected six deregulated EV-miRs (miR19a-3p, miR-20a-5p, miR-142-3p, miR-1260a, miR-1260b, miR-5100) in responding patients. Their longitudinal monitoring highlighted a significant downmodulation already in the first treatment cycles, which lasted more than six months.

Grantee: Simona Coco
Grantor: Italian Ministry of Health
Grant ID: CO-2016-02361470
Grant Title: Exosomal miRNA signature as prognostic marker in advanced non-small cell lung cancer (NSCLC) patients treated with Nivolumab
 
Overall design 174 plasma Exososome miRNAs were profiled comparing short survivors (patients with an overall survival lower than 9 months) versus long survivors ( patients with an OS higher than 9 months). 108 plasma exosome miRNAs derived from 54 NSCLC patients reporting disease control (i.e., 31 stable disease and 23 Partial Response; based on RECIST criteria) after treatment with nivolumab. For each patient, plasma samples were collected at baseline and at the best response time. The entire exosome miRNome was profiled comparing the changes from baseline to the best response.
Web link https://www.researchsquare.com/article/rs-4258337/v1
 
Contributor(s) Coco S, Marconi S, Chiorino G, Guana F, Longo L, Vanni I, Ostano P, Genova C
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 08, 2022
Last update date Oct 27, 2024
Contact name simona coco
E-mail(s) [email protected], [email protected]
Phone +390105558316
Organization name IRCCS Ospedale Policlinico San Martino
Lab Lung Cancer Unit
Street address L.go R. Benzi, 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platforms (2)
GPL21576 Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (Probe Name version)
GPL25134 Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (miRNA ID version)
Samples (282)
GSM6310759 NSCLC Plasma_Exo-miRNA_sample_1
GSM6310760 NSCLC Plasma_Exo-miRNA_sample_2
GSM6310761 NSCLC Plasma_Exo-miRNA_sample_3
Relations
BioProject PRJNA856872

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE207715_RAW.tar 790.1 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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