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| Status |
Public on Nov 01, 2023 |
| Title |
HIV-1 latent infection triggers broader transcriptional changes in protein-coding and long non-coding RNAs than active infection of SupT1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38038477 |
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| Submission date |
Aug 31, 2022 |
| Last update date |
Feb 06, 2024 |
| Contact name |
Gabrielle Lê-Bury |
| E-mail(s) |
[email protected]
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| Organization name |
Cornell University
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| Street address |
930 campus road
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| City |
Ithaca |
| ZIP/Postal code |
14850 |
| Country |
USA |
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| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL30173 |
NextSeq 2000 (Homo sapiens) |
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| Samples (15)
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| GSM6533104 |
SupT1, Active, ATAC, rep1 |
| GSM6533105 |
SupT1, Active, ATAC, rep2 |
| GSM6533106 |
SupT1, Active, ATAC, rep3 |
| GSM6533107 |
SupT1, Latent, ATAC, rep1 |
| GSM6533108 |
SupT1, Latent, ATAC, rep2 |
| GSM6533109 |
SupT1, Latent, ATAC, rep3 |
| GSM6533110 |
SupT1, Uninfected, rep1 |
| GSM6533111 |
SupT1, Uninfected, rep2 |
| GSM6533112 |
SupT1, Active-infected, rep1 |
| GSM6533113 |
SupT1, Active-infected, rep2 |
| GSM6533114 |
SupT1, Latent-infected, rep1 |
| GSM6533115 |
SupT1, Latent-infected, rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE212462 |
HIV-1 latent infection triggers broader epigenomic changes in protein-coding and long non-coding RNAs than active infection of SupT1 cells (ATAC-Seq) |
| GSE212463 |
HIV-1 latent infection triggers broader transcriptional changes in protein-coding and long non-coding RNAs than active infection of SupT1 cells (RNA-Seq) |
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| Relations |
| BioProject |
PRJNA875461 |
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