NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE231763 Query DataSets for GSE231763
Status Public on Jul 20, 2023
Title RNA-seq of heart healthy and heart diseased SCGs
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Disruption of the physiologic sleep-wake cycle and low melatonin levels frequently accompany cardiac disease, yet the underlying mechanism has remained enigmatic. Immunostaining of sympathetic axons in optically cleared pineal glands from humans and mice with cardiac disease revealed their substantial denervation compared to controls. Spatial, single-cell, nuclear, and bulk RNA sequencing traced this defect back to the superior cervical ganglia (SCG), which responded to cardiac disease with accumulation of inflammatory macrophages, fibrosis, and the selective loss of pineal gland-innervating neurons. Depletion of macrophages in the SCG prevented disease-associated denervation of the pineal gland and restored physiological melatonin secretion. Our data identify the mechanism underlying the disturbance of diurnal rhythmicity in cardiac disease and suggest means for therapeutic intervention.
 
Overall design SCGs from heart healthy and heart diseased donors were subjected to bulk RNA-seq.
 
Contributor(s) Ziegler KA, Engelhardt S
Citation(s) 37471539
Submission date May 05, 2023
Last update date Oct 26, 2023
Contact name Karin A. Ziegler
E-mail(s) [email protected]
Organization name Technical University of Munich
Street address Biedersteiner Str. 29
City Munich
ZIP/Postal code 80802
Country Germany
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM7300173 hSCG_healthy1
GSM7300174 hSCG_healthy2
GSM7300175 hSCG_healthy3
This SubSeries is part of SuperSeries:
GSE231767 heart healthy and heart diseased SCGs
Relations
BioProject PRJNA967653

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE231763_RAW.tar 9.1 Mb (http)(custom) TAR (of GTF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap