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| Status |
Public on Aug 05, 2010 |
| Title |
soma-only_mid-L4_25dC_36hrs_post-L1_JK1107_tiling_array |
| Project |
modENCODE
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| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
modENCODE_submission_485
This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Keywords: Transcript tiling array analysis
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| Overall design |
EXPERIMENT TYPE: Transcript tiling array analysis. BIOLOGICAL SOURCE: Strain: JK1107; Developmental Stage: larva mid-L4 25dC 34.25 hrs post-L1; Genotype: glp-1(q224) III; Sex: Hermaphrodite; NUMBER OF REPLICATES: 3; EXPERIMENTAL FACTORS: Strain JK1107; Developmental Stage larva mid-L4 25dC 34.25 hrs post-L1
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| Web link |
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
http://www.modencode.org
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| Contributor(s) |
Waterston B, Reinke V, Gerstein M, Wilson M, Argiwal A |
| Citation(s) |
21177967 |
| BioProject |
PRJNA168961 |
| |
| Submission date |
Jul 28, 2010 |
| Last update date |
Apr 30, 2013 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
[email protected]
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
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| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Platforms (1) |
| GPL5634 |
[Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array |
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| Samples (3) |
| GSM571493 |
soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array extraction1_array1 |
| GSM571494 |
soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array extraction2_array1 |
| GSM571495 |
soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array extraction3_array1 |
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