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| Status |
Public on Aug 05, 2010 |
| Title |
pathogen_Smarcescens_25dC_24hr_exposure_post-adulthood_N2_tiling_array |
| Project |
modENCODE
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| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
modENCODE_submission_489
This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels. Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Keywords: Transcript tiling array analysis
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| Overall design |
EXPERIMENT TYPE: Transcript tiling array analysis. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: Young Adult (pre-gravid) 25dC 46 hrs post-L1; Genotype: wild type; Sex: Hermaphrodite; NUMBER OF REPLICATES: 3; EXPERIMENTAL FACTORS: GrowthCondition S. marcescens (Db11); Developmental Stage Young Adult (pre-gravid) 25dC 46 hrs post-L1; Strain N2; age 24
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| Web link |
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
http://www.modencode.org
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| |
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| Contributor(s) |
Waterston B, Reinke V, Gerstein M, Wilson M, Argiwal A |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA168961 |
| |
| Submission date |
Jul 28, 2010 |
| Last update date |
Apr 30, 2013 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
[email protected]
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
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| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Platforms (1) |
| GPL5634 |
[Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array |
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| Samples (3) |
| GSM571504 |
pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array extraction1_array1 |
| GSM571505 |
pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array extraction2_array1 |
| GSM571506 |
pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array extraction3_array1 |
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