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Series GSE235233 Query DataSets for GSE235233
Status Public on Jun 06, 2024
Title Senescent cancer-associated fibroblasts in pancreatic adenocarcinoma suppress CD8+ T cell activation and inhibit response to immune checkpoint therapy [Cultured_Human_Mouse]
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Senescent cells appear within tumors and their stroma, exerting complex pro- and anti-tumorigenic functions. The effects of senescent tumor stromal cells are mostly unknown, as is the potential for targeting such senescent cells for improved therapy. Here we uncover the presence of a senescent subset of cancer-associated fibroblasts (CAFs) within pancreatic adenocarcinomas and in premalignant pancreatic lesions. Senescent CAFs show reduced proliferation, and are often associated with the inflammatory CAF (iCAF) subtype. We isolated and characterized senescent CAFs from mouse models and directly from human patients, and found that they express elevated levels of immune-regulatory genes. In a panel of mouse PDACs, high levels of senescent CAFs correlated with low T cell infiltration. Removal of senescent CAFs from PDAC stroma, either genetically or through treatment with the senolytic drug ABT-199 (venetoclax), a Bcl2 inhibitor, increased rates of activated cytotoxic CD8+ T cells within tumors. Conversely, activation of CAF senescence within PDACs led to reduced CD8+ T cell numbers. Media from senescent PDAC CAFs inhibited T cell proliferation and activation. We show that implanted PDAC tumors show improved response to immune checkpoint therapy when co-treated with the senolytic drug. These results reveal that the presence of senescent CAFs in PDAC stroma acts to repress cytotoxic T cell activity, and suggest that their targeted elimination through senolytic treatment may enhance immunotherapy.
 
Overall design Senescence was induced in cultured primary mouse and human PDAC CAFs using a CRE-ER inducible system, and transcriptomes were analyzed.
 
Contributor(s) Assouline B, Monin J, Ben-Porath I
Citation(s) 39039076
Submission date Jun 20, 2023
Last update date Aug 16, 2024
Contact name Ittai Ben-Porath
E-mail(s) [email protected]
Organization name The Hebrew University Faculty of Medicine
Department Department of Developmental Biology and Cancer Research
Street address Ein-Kerem
City Jerusalem
State/province N/A
ZIP/Postal code 91120
Country Israel
 
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (16)
GSM7497416 Cultured human CAFs_Non-sen1
GSM7497417 Cultured human CAFs_Non-sen2
GSM7497418 Cultured human CAFs_Non-sen3
This SubSeries is part of SuperSeries:
GSE235246 Senescent cancer-associated fibroblasts in pancreatic adenocarcinoma impair CD8+ T cell activation and responsiveness to immunotherapy in mice
Relations
BioProject PRJNA985609

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235233_raw_gene_count_Cultured_Human.txt.gz 379.0 Kb (ftp)(http) TXT
GSE235233_raw_gene_count_Cultured_Mouse.txt.gz 407.4 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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