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Series GSE260878 Query DataSets for GSE260878
Status Public on Apr 28, 2024
Title EHF is an essential regulator of mammary alveolar lineage differentiation and putative suppressor of breast tumorigenesis
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The Ets homologous factor (Ehf) is highly expressed in the mammary gland in pregnancy and lactation. Mothers with Ehf deletion fail to lactate due to impaired lobuloalveolar development. ATACseq profiling of luminal mammary epithelial cells at late pregnancy (18.5dP) demonstrated that loss of Ehf results in significant chromatin remodelling.
 
Overall design ATAC sequencing of luminal mammary epithelial cells (Ter119–CD31−CD45–CD24+CD29Lo) from mice with and without deletion of Ehf at late pregnancy (18.5 days pregnant)
 
Contributor(s) Liao Y, Nightingale R, Reehorst C, Vaillant F, Visvader J, Pal B, Mariadason J, Shi W
Citation(s) 38781975
Submission date Mar 05, 2024
Last update date Jul 28, 2024
Contact name Wei Shi
E-mail(s) [email protected]
Organization name Olivia Newton John Cancer Research Institute
Department Bioinformatics and Cancer Genomics
Street address Level 5, ONJ Cancer Centre, 145 Studley Rd
City Heidelberg
State/province VIC
ZIP/Postal code 3084
Country Australia
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM8127351 WT, ATACseq Rep1
GSM8127352 WT, ATACseq Rep2
GSM8127353 WT, ATACseq Rep3
Relations
BioProject PRJNA1083897

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE260878_RAW.tar 3.5 Mb (http)(custom) TAR (of TSV)
GSE260878_raw_read_counts.txt.gz 3.3 Mb (ftp)(http) TXT
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Raw data are available in SRA

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