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Series GSE32494 Query DataSets for GSE32494
Status Public on Sep 30, 2011
Title Targeting the hemangioblast with a novel cell type-specific enhancer
Organism Gallus gallus
Experiment type Expression profiling by array
Summary Hemangioblasts are known as the common precursors for primitive hematopoietic and endothelial lineages. Their existence has been supported mainly by the observation that both cell types develop in close proximity and by in vitro differentiation and genetic studies. However, more compelling evidence will arise from tracking their cell fates using a lineage-specific marker. We report the identification of a hemangioblast-specific enhancer (Hb) located in the cis-regulatory region of chick Cerberus gene (cCer) that is able to direct the expression of enhanced green fluorescent protein (eGFP) to the precursors of yolk sac blood and endothelial cells in electroporated chick embryos. Moreover, we present the Hb-eGFP reporter as a powerful live imaging tool for visualizing hemangioblast cell fate and blood island morphogenesis. We hereby introduce the Hb enhancer as a valuable resource for genetically targeting the hemangioblast population as well as for studying the dynamics of vascular and blood cell development.
We used microarray analysis of Hb-eGFP expressing cells to verify the expression of hemangioblast-specific genes in this cell population.
 
Overall design In order to characterize the gene expression profile of the Hb-eGFP-positive population, we have isolated Hb-eGFP-positive cells and compared their expression profile with the control RFP-positive population. In brief, chicken embryos were electroporated at HH3 with Hb-eGFP and pCAGGS-RFP reporter constructs, observed under a fluorescence stereoscope and harvested at stage HH5-6 into three groups of four embryos each. Embryos were dissociated into single cell suspensions and the eGFP-positive and eGFP-negative/RFP-positive cell populations were sorted by Fluorescence Activated Cell Sorting (FACS). Cell populations were collected simultaneously into two different tubes, containing RNAlater (Ambion) and subsequently used for RNA extraction. Total RNA was isolated from triplicates of each population, evaluated for RNA integrity, reverse transcribed, amplified and hybridized against six Affymetrix Chicken Genome microarrays.
 
Contributor(s) Tavares AT
Citation(s) 22204590, 29385069
Submission date Sep 29, 2011
Last update date May 22, 2019
Contact name Ana Teresa Tavares
E-mail(s) [email protected]
Organization name IGC
Street address Rua da Quinta Grande, 6
City Oeiras
ZIP/Postal code 2781-901
Country Portugal
 
Platforms (1)
GPL3213 [Chicken] Affymetrix Chicken Genome Array
Samples (6)
GSM804366 eGFP+ cells, biological rep1
GSM804367 RFP+ cells, biological rep1
GSM804368 eGFP+ cells, biological rep2
Relations
BioProject PRJNA147765

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE32494_RAW.tar 19.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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