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Series GSE33204 Query DataSets for GSE33204
Status Public on Oct 26, 2011
Title DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
Organism Oryza sativa
Experiment type Expression profiling by array
Summary DNA microarray analysis has been proved to be an effective method in investigating unintended effects in genetically modified (GM) crops. But the distribution of differentially expressed genes in GM crops remains unclear. So the results of microarray analysis might be invalid for assessment of unintended effects if differentially expressed genes are extremely distributed. We used microarrays to study the distribution pattern of differentially expressed genes in HH1 at different developmental stages and environmental conditions.
 
Overall design Samples were collected from both HH1 and MH63 at different developmental stages and environmental conditions and were used for RNA extraction and hybridization on Affymetrix microarrays. We selected differentially expressed genes, common differentially expressed genes and common significantly changed pathways hoping to clarify the distributions of differentially expressed genes in HH1.
 
Contributor(s) Qi F, Liu Z
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Submission date Oct 25, 2011
Last update date Dec 27, 2017
Contact name Jie Zhao
E-mail(s) [email protected]
Phone 15901108454
Organization name Institute of Plant Protection, Chinese Academe of Agricultural Sciences
Street address No. 2 Yuan Ming Yuan West Street
City Beijing
ZIP/Postal code 100193
Country China
 
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (60)
GSM822070 HH1-30, biological replicate 1
GSM822071 HH1-30, biological replicate 2
GSM822072 HH1-30, biological replicate 3
Relations
BioProject PRJNA149257

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33204_RAW.tar 256.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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