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Series GSE38324 Query DataSets for GSE38324
Status Public on May 30, 2015
Title Chromatin context and ncRNA highlight physiological targets of MECP2 in brain.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary Analysis of chromatin and sequence context and RNA highlighting MeCP2 function in the genome
 
Overall design ChIP-seq data uses 2 libraries for each sample comprising a bound and input reference, RNA-seq data uses MeCP2 null sample compared with 2 wild type replicate samples, Methylminer-seq data uses 1 high methylation sample and 1 low methylation sample, RNA-immunoprecipitated data uses 3 replicate samples.
 
Contributor(s) Maxwell S, Pelka G, Tam P, El-Osta A
Citation(s) 24270455
Submission date May 30, 2012
Last update date May 15, 2019
Contact name Assam El-Osta
Organization name Baker Heart and Diabetes Institute
Lab Human Epigenetics
Street address 75 Commercial Road
City Melbourne
ZIP/Postal code 3004
Country Australia
 
Platforms (1)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
Samples (19)
GSM939572 ChIP of sonicated whole brain MECP2 IP
GSM939573 ChIP of sonicated whole brain INPUT
GSM939574 ChIP of MNase mononucleosome selected whole brain material MECP2 IP
Relations
BioProject PRJNA167676
SRA SRP013439

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE38324_EXPRESSION_CEREB_FOLD_CHANGE.txt.gz 1.1 Mb (ftp)(http) TXT
GSE38324_EXPRESSION_LEVEL_WT_CEREB_RPKM.txt.gz 983.3 Kb (ftp)(http) TXT
GSE38324_PROFILE_ACT_REP_HI_LO_CGAT4_INDIVIDUAL_REGIONS.txt.gz 28.0 Kb (ftp)(http) TXT
GSE38324_RIP_COUNT_GENE.txt.gz 1.4 Mb (ftp)(http) TXT
GSE38324_RIP_COUNT_LNCRNA.txt.gz 3.3 Kb (ftp)(http) TXT
GSE38324_RIP_COUNT_REL_EXPRESSION.txt.gz 1.3 Mb (ftp)(http) TXT
GSE38324_TSSCOUNT_CHIP_MNASE_DIN_CEREB.txt.gz 1.1 Mb (ftp)(http) TXT
GSE38324_TSSCOUNT_CHIP_MNASE_MONON_CEREB.txt.gz 1.0 Mb (ftp)(http) TXT
GSE38324_TSSCOUNT_CHIP_MNASE_MONON_WB.txt.gz 1.0 Mb (ftp)(http) TXT
GSE38324_TSSCOUNT_CHIP_SONICATED_WB.txt.gz 987.8 Kb (ftp)(http) TXT
GSE38324_TSSCOUNT_METHYL_CEREB.txt.gz 628.3 Kb (ftp)(http) TXT
GSE38324_readme.txt 1.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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