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Series GSE38838 Query DataSets for GSE38838
Status Public on Jun 19, 2013
Title Cross-presenting CD103+ dendritic cells are protected from influenza virus infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary CD8+ cytotoxic T cells are critical for viral clearance from the lungs upon influenza virus infection. The contribution of cross-presentation to the induction of anti-viral cytotoxic T cells remains debated. Here, we used a recombinant influenza virus expressing a NS1-GFP reporter gene to visualize the route of antigen presentation by lung dendritic cells (DC) upon viral infection in vivo. We found that lung CD103+ DC are the only subset to carry intact GFP protein to the draining lymph nodes. Strikingly, lung migratory CD103+ DC are not productively infected by influenza virus and thus induce virus-specific CD8+ T cells through the cross-presentation of antigens from virally infected cells. We also show that CD103+ DC resistance to infection correlates with an increased antiviral state in these cells that is dependent on the expression of IFN receptor alpha. In conclusion, these results establish that efficient cross-priming by migratory lung DC is coupled to the acquisition of an anti-viral status, which is dependent on type I IFN signaling pathway.
 
Overall design mRNA profiles were generated by deep-sequencing in Illumina HiSeq2000 from alveolar macrophages and CD103+ dendritic cells from lungs of untreated and flu-treated mice
 
Contributor(s) Merad M, Brown BD, García-Sastre A
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Submission date Jun 20, 2012
Last update date May 15, 2019
Contact name Brian Brown
E-mail(s) [email protected]
Organization name Icahn School of Medicine at Mount Sinai
Department Genetics and Genomic Sciences
Street address 1470 Madison Avenue
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4)
GSM950622 CD103+ dendritic cells from untreated mice
GSM950623 CD103+ dendritic cells from flu-treated mice
GSM950624 Macrophages from untreated mice
Relations
BioProject PRJNA169091
SRA SRP013843

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Supplementary file Size Download File type/resource
GSE38838_Flu_consolidated.txt.gz 101.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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