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| Status |
Public on Sep 30, 2013 |
| Title |
Transcriptional Characterization of Streptococcus pneumoniae Interacting with Human Pharyngeal Cells |
| Organism |
Streptococcus pneumoniae TIGR4 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used a combination of adherence assays, mutagenesis and functional genomics to identify novel factors involved in adherence. This work identifies a list of novel potential pneumococcal adherence determinants.
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| Overall design |
S. pneumoniae TIGR4 transcriptome was sequenced using RNA-Seq on the Illumina GA. High-quality, single ended, 36bp reads were mapped to the TIGR4 genome.
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| Contributor(s) |
Kimaro-Mlacha SZ, Romero-Steiner S, Dunning-Hotopp JC, Kumar N, Ishmael N, Riley DR, Farooq U, Creasy TH, Tallon LJ, Liu X, Hine EE, Goldsmith CS, Sampson J, Carlone GM, Hollingshead SK, Scott JG, Tettelin H |
| Citation(s) |
23758733 |
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| Submission date |
Mar 07, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Jerry Liu |
| E-mail(s) |
[email protected]
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| Organization name |
IGS
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| Street address |
801 W. Baltimore St.
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| City |
Baltimore |
| ZIP/Postal code |
21201 |
| Country |
USA |
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| Platforms (1) |
| GPL16764 |
Illumina Genome Analyzer (Streptococcus pneumoniae TIGR4) |
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| Samples (1) |
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| Relations |
| SRA |
SRP019028 |
| BioProject |
PRJNA192825 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE44947_RAW.tar |
20.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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