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Series GSE45238 Query DataSets for GSE45238
Status Public on Jan 07, 2015
Title Identification of oral carcinoma miRNA involved in Wnt/b-catenin signaling
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary MicroRNAs (miRNAs) participate in many biological processes and have emerged as key players in carcinogenesis. In order to identify changes in miRNAs specific for betelquid-associated oral squamous cell carcinoma (OSCC), we investigated the expression profiles of 858 miRNAs in a panel of 40 pairs of OSCC specimens and their matched non-tumorous epithelial counterparts. Eighty-four miRNAs were differentially expressed in the OSCC specimens compared to the matched tissue. Among these miRNAs, 19 downregulated miRNAs located in the chromosome 14q32.2 miRNA cluster region were analyzed. This miRNA cluster resides within a parentally imprinted region known to be important in development and growth. The re-expression of miR-329 and miR-410from this cluster significantly reduced OSCC cell proliferation and invasion and downregulated Wnt-7b, an activator of the Wnt/b-catenin pathway. Furthermore, the expression of those 2 miRNAs was restored by 5-aza-2′-deoxycytidine treatment and the expression levels of the 2 miRNAs were inversely correlated with the hypermethylation of the Meg-3 promoter in OSCC cells. Specifically, arecoline, a major betel nut alkaloid, reduces miR-329 and miR-410 expression. Our results thus provide a novel molecular insight into how betel quid may contribute to oral carcinogenesis through the epigenetic silencing of tumor suppressor miRNAs targeting the Wnt/b-catenin signaling pathway.
 
Overall design Total RNA was obtained from 40 pairs of OSCC patients with tumor specimens and their adjacent non-tumorous epithelia.
 
Contributor(s) Shiah S, Hsiao J, Chang J
Citation(s) 25351956, 31253192, 32238162, 32961483
Submission date Mar 18, 2013
Last update date Oct 06, 2020
Contact name Shine-Gwo Shiah
E-mail(s) [email protected]
Organization name National Health Research Institutes
Department National Institute of Cancer Research
Street address No. 35, Keyan Rd.
City Zhunan
State/province Miaoli County
ZIP/Postal code 350
Country Taiwan
 
Platforms (1)
GPL8179 Illumina Human v2 MicroRNA expression beadchip
Samples (80)
GSM1099620 non-OSCC_01N
GSM1099621 non-OSCC_02N
GSM1099622 non-OSCC_03N
Relations
BioProject PRJNA193307

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE45238_RAW.tar 70.0 Kb (http)(custom) TAR
GSE45238_non_normalized.txt.gz 275.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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