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Series GSE53415 Query DataSets for GSE53415
Status Public on Dec 31, 2015
Title Gene expression profiling of primary human hepatocytes after berberine chloride treatment
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Berberine, an isoquinoline alkaloid isolated from many medicinal herbs such as Coptis chinensis, has a wide range of pharmacological effects. Since xenobiotic drug-induced micoRNAs have recently emerged as key regulators in guiding their pharmacological effects and toxicity, we were interested in whether or not micoRNA expression was differentially altered by berberine treatment in liver. Here, we used miRNA microarray to analyze microRNA expression profiles of primary human hepatocytes after berberine chloride treatment or 0.08% DMSO as control.
 
Overall design Comparing gene expression profiles of 40 M berberine-treated primary human hepatocytes to those of control cells sampled after 2, 4, or 8 hours treatment. A 50 mM stock solution of Berberine chloride was prepared in DMSO. Cells were treated with 40 M berberine chloride or 0.08% DMSO as control.
 
Contributor(s) Lo T, Chen S
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Submission date Dec 17, 2013
Last update date Oct 11, 2016
Contact name Ting-fang Lo
E-mail(s) [email protected]
Phone +886-939964794
Organization name Academia Sinica
Department Institute of Biological Chemistry
Street address 128 Academia Road, Section 2, Nankang, Taipei 115, Taiwan
City Taipei
ZIP/Postal code 115
Country Taiwan
 
Platforms (1)
GPL14550 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Probe Name Version)
Samples (18)
GSM1291094 PHH_control_2hr_donor 1
GSM1291095 PHH_berberine_2hr_donor 1
GSM1291096 PHH_control_2hr_donor 2
This SubSeries is part of SuperSeries:
GSE53416 MicroRNA and gene expression profiling of primary human hepatocytes after berberine chloride treatment
Relations
BioProject PRJNA231939

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53415_RAW.tar 218.9 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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