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GEO accession:
Series GSE77401
Query DataSets for GSE77401
Status
Public on Jun 07, 2016
Title
Modulated expression of specific tRNA species drives cancer progression
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27259150
Submission date
Jan 29, 2016
Last update date
May 15, 2019
Contact name
Hani Goodarzi
Organization name
UCSF
Department
Biochemistry and Biophysics
Street address
600 16th St, GH S312D
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platforms (3)
GPL10558
Illumina HumanHT-12 V4.0 expression beadchip
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (66)
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More...
GSM2047269
MDA_tRNA-Arg-OE_r1
GSM2047270
MDA_tRNA-Arg-OE_r2
GSM2047271
MDA_tRNA-Glu-OE_r1
GSM2047272
MDA_tRNA-Glu-OE_r2
GSM2047273
MDA_Ctrl_r1
GSM2047274
MDA_Ctrl_r2
GSM2048204
CN34-RPF-rep1
GSM2048205
CN34-RPF-rep2
GSM2048206
CN34-TT-rep1
GSM2048207
CN34-TT-rep2
GSM2048208
CN34-LM1a-RPF-rep1
GSM2048209
CN34-LM1a-RPF-rep2
GSM2048210
CN34-LM1a-TT-rep1
GSM2048211
CN34-LM1a-TT-rep2
GSM2049157
MDA-RPF-rep1
GSM2049158
MDA-RPF-rep2
GSM2049159
MDA-TT-rep1
GSM2049160
MDA-TT-rep2
GSM2049161
MDA-LM2-RPF-rep1
GSM2049162
MDA-LM2-RPF-rep2
GSM2049163
MDA-LM2-TT-rep1
GSM2049164
MDA-LM2-TT-rep2
GSM2049169
MDA-ctrl-RPF-rep1
GSM2049170
MDA-ctrl-RPF-rep2
GSM2049171
MDA-ctrl-TT-rep1
GSM2049172
MDA-ctrl-TT-rep2
GSM2049173
MDA-Arg-RPF-rep1
GSM2049174
MDA-Arg-RPF-rep2
GSM2049175
MDA-Arg-TT-rep1
GSM2049176
MDA-Arg-TT-rep2
GSM2049892
MDA-ctrl-RPF-rep1-readlane1
GSM2049894
MDA-ctrl-RPF-rep1-readlane2
GSM2049896
MDA-ctrl-TT-rep1-readlane1
GSM2049898
MDA-ctrl-TT-rep1-readlane2
GSM2049900
MDA-ctrl-RPF-rep2-readlane1
GSM2049902
MDA-ctrl-RPF-rep2-readlane2
GSM2049904
MDA-ctrl-TT-rep2-readlane1
GSM2049907
MDA-ctrl-TT-rep2-readlane2
GSM2049908
MDA-glu-RPF-rep1-readlane1
GSM2049910
MDA-glu-RPF-rep1-readlane2
GSM2049912
MDA-glu-TT-rep1-readlane1
GSM2049914
MDA-glu-TT-rep1-readlane2
GSM2049916
MDA-glu-RPF-rep2-readlane1
GSM2049917
MDA-glu-RPF-rep2-readlane2
GSM2049918
MDA-glu-TT-rep2-readlane1
GSM2049919
MDA-glu-TT-rep2-readlane2
GSM2049920
MDA-ctrl-RPF-rep1-readlane3
GSM2049921
MDA-ctrl-TT-rep1-readlane3
GSM2049922
MDA-ctrl-RPF-rep2-readlane3
GSM2049923
MDA-ctrl-TT-rep2-readlane3
GSM2049924
MDA-glu-RPF-rep1-readlane3
GSM2049925
MDA-glu-TT-rep1-readlane3
GSM2049926
MDA-glu-RPF-rep2-readlane3
GSM2049927
MDA-glu-TT-rep2-readlane3
GSM2049955
MDA_Ctrl_0h_r1
GSM2049956
MDA_Ctrl_0h_r2
GSM2049957
MDA_tRNA-Arg-OE_0h_r1
GSM2049958
MDA_tRNA-Arg-OE_0h_r2
GSM2049959
MDA_tRNA-Glu-OE_0h_r1
GSM2049960
MDA_tRNA-Glu-OE_0h_r2
GSM2049961
MDA_Ctrl_9h_r1
GSM2049962
MDA_Ctrl_9h_r2
GSM2049963
MDA_tRNA-Arg-OE_9h_r1
GSM2049964
MDA_tRNA-Arg-OE_9h_r2
GSM2049965
MDA_tRNA-Glu-OE_9h_r1
GSM2049966
MDA_tRNA-Glu-OE_9h_r2
This SuperSeries is composed of the following SubSeries:
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GSE77285
Impact of tRNA-Glu(UUC) and tRNA-Arg(CCG) on mRNA abundance
GSE77292
Ribosomal footprinting of CN34-Parental and CN34-LM1a
GSE77315
Ribosomal footprinting of MDA-Parental and MDA-LM2
GSE77317
Ribosomal footprinting of MDA_Ctrl and MDA_Arg overexpression cell lines
GSE77347
Ribosomal footprinting of MDA_Ctrl and MDA_Glu overexpression cell lines
GSE77349
Impact of tRNA-Glu(UUC) and tRNA-Arg(CCG) on mRNA stability
Relations
BioProject
PRJNA310227
Download family
Format
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Supplementary file
Size
Download
File type/resource
GSE77401_RAW.tar
58.0 Mb
(http)
(custom)
TAR (of FPKM_TRACKING)
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