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Series GSE95690 Query DataSets for GSE95690
Status Public on Apr 10, 2017
Title Illumina SNP array data for acute myeloid leukemia samples
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Pediatric patients with de novo acute myeloid leukemia. To define genomic architecture, we performed genome-wide copy number abberation analysis in 460 paired diagnostic-remission bone marrow aspirates.
Illumina SNP arrays were performed according to the manufacturer's directions on DNA extracted from cryopreserved diagnostic and remission bone marrow samples.
 
Overall design Copy number abberation analysis of Affymetrix 6.0 SNP arrays (254 sample pairs) and Illumina 2.5M Omni arrays (206 sample pairs) was performed for 460 acute myeloid leukemia samples
This Series represents the Illumina dataset.
 
Contributor(s) Meshinchi S, Aplenc R, Vujkovic M, Ries RE
Citation(s) 28411282
Submission date Mar 04, 2017
Last update date Apr 24, 2017
Contact name Richard Aplenc
E-mail(s) [email protected]
Phone (215) 590-3025
Organization name Children's Hospital of Philadelphia
Department Division of Oncology
Street address 3501 Civic Center Blvd
City Philadelphia, PA
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (2)
GPL23135 Illumina HumanOmni 2.5M 4v1-D SNP array
GPL23136 Illumina HumanOmni 2.5M 4v1-H SNP array
Samples (412)
GSM2521758 Patient L001 Remission
GSM2521759 Patient L001 Diagnostic
GSM2521760 Patient L002 Remission
This SubSeries is part of SuperSeries:
GSE95691 SNP array data for acute myeloid leukemia samples
Relations
BioProject PRJNA377959

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95690_COG_LUM_AML_Batch_A_Processed_data_1of4.txt.gz 3.5 Gb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_A_Processed_data_2of4.txt.gz 3.5 Gb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_A_Processed_data_3of4.txt.gz 3.5 Gb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_A_Processed_data_4of4.txt.gz 3.6 Gb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_A_Raw_Intensities.txt.gz 3.4 Gb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_B_Processed_data.txt.gz 221.8 Mb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_B_Raw_Intensities.txt.gz 56.3 Mb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_C_Processed_data.txt.gz 1.6 Gb (ftp)(http) TXT
GSE95690_COG_LUM_AML_Batch_C_Raw_Intensities.txt.gz 407.7 Mb (ftp)(http) TXT
Processed data are available on Series record

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