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Status |
Public on Apr 10, 2017 |
Title |
Illumina SNP array data for acute myeloid leukemia samples |
Organism |
Homo sapiens |
Experiment type |
Genome variation profiling by SNP array SNP genotyping by SNP array
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Summary |
Pediatric patients with de novo acute myeloid leukemia. To define genomic architecture, we performed genome-wide copy number abberation analysis in 460 paired diagnostic-remission bone marrow aspirates. Illumina SNP arrays were performed according to the manufacturer's directions on DNA extracted from cryopreserved diagnostic and remission bone marrow samples.
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Overall design |
Copy number abberation analysis of Affymetrix 6.0 SNP arrays (254 sample pairs) and Illumina 2.5M Omni arrays (206 sample pairs) was performed for 460 acute myeloid leukemia samples This Series represents the Illumina dataset.
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Contributor(s) |
Meshinchi S, Aplenc R, Vujkovic M, Ries RE |
Citation(s) |
28411282 |
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Submission date |
Mar 04, 2017 |
Last update date |
Apr 24, 2017 |
Contact name |
Richard Aplenc |
E-mail(s) |
[email protected]
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Phone |
(215) 590-3025
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Organization name |
Children's Hospital of Philadelphia
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Department |
Division of Oncology
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Street address |
3501 Civic Center Blvd
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City |
Philadelphia, PA |
State/province |
PA |
ZIP/Postal code |
19104 |
Country |
USA |
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Platforms (2) |
GPL23135 |
Illumina HumanOmni 2.5M 4v1-D SNP array |
GPL23136 |
Illumina HumanOmni 2.5M 4v1-H SNP array |
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Samples (412)
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This SubSeries is part of SuperSeries: |
GSE95691 |
SNP array data for acute myeloid leukemia samples |
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Relations |
BioProject |
PRJNA377959 |
Supplementary file |
Size |
Download |
File type/resource |
GSE95690_COG_LUM_AML_Batch_A_Processed_data_1of4.txt.gz |
3.5 Gb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_A_Processed_data_2of4.txt.gz |
3.5 Gb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_A_Processed_data_3of4.txt.gz |
3.5 Gb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_A_Processed_data_4of4.txt.gz |
3.6 Gb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_A_Raw_Intensities.txt.gz |
3.4 Gb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_B_Processed_data.txt.gz |
221.8 Mb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_B_Raw_Intensities.txt.gz |
56.3 Mb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_C_Processed_data.txt.gz |
1.6 Gb |
(ftp)(http) |
TXT |
GSE95690_COG_LUM_AML_Batch_C_Raw_Intensities.txt.gz |
407.7 Mb |
(ftp)(http) |
TXT |
Processed data are available on Series record |