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Sample GSM1002 Query DataSets for GSM1002
Status Public on Feb 12, 2002
Title DBY7286 + 0.3 mM H2O2 (20 min)
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 20 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11-20
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 262 93 538 444 262 204 182 153 220 373 .593 0 -1.29 .556 64 49 2.053 2.445 .487 .409 .327 990 225 31 48 147 164 -1.29
2 308 103 297 415 220 276 195 164 185 349 .534 0 -.685 .487 47 27 1.35 1.607 .741 .622 .528 731 225 31 48 164 181 -.685
3 344 116 484 793 558 370 235 197 469 666 .708 0 -.046 1.024 56 38 .867 1.033 1.153 .968 1.001 746 225 31 48 182 199 -.046
4 295 106 348 556 310 325 246 207 260 467 .737 0 -.419 .916 48 32 1.123 1.337 .891 .748 .829 746 225 31 48 200 217 -.419
5 238 83 474 801 613 258 188 158 515 673 .759 0 .119 .846 56 42 .773 .921 1.293 1.086 1.28 816 225 31 48 218 235 .119
6 220 75 260 455 307 200 148 124 258 382 .678 0 -.012 .75 48 26 .847 1.008 1.181 .992 1.164 838 225 31 48 238 255 -.012
7 206 74 112 149 5 152 144 121 4 125 -.029 0 -4.737 .238 37 12 22.4 26.671 .045 .037 -.007 767 225 31 48 256 273 -4.737
8 225 77 127 150 181 164 138 -12 126 -.018 0 .179 40 8 -.004 766 225 31 48 273 290
9 231 76 104 200 26 188 174 146 22 168 .042 0 -2.252 .421 39 20 4 4.763 .25 .21 .015 781 225 31 48 291 308 -2.252
10 226 76 131 150 174 164 138 -12 126 -.033 0 .118 45 6 -.007 735 225 32 49 309 326
11 224 72 106 176 2 191 174 146 2 148 .159 0 -5.98 .355 33 11 53 63.104 .019 .016 .047 735 225 32 49 327 344 -5.98
12 241 84 158 177 223 202 170 -21 149 -.002 0 .279 44 3 0 747 225 32 49 345 362
13 233 81 203 235 37 215 198 166 31 197 .076 0 -2.708 .267 51 20 5.486 6.532 .182 .153 .024 758 225 32 49 363 380 -2.708
14 225 72 196 174 4 184 170 143 3 146 .248 0 -5.866 .257 49 10 49 58.342 .02 .017 .07 758 225 32 49 381 398 -5.866
15 212 71 133 150 166 151 127 -1 126 .054 0 .189 36 11 .009 736 225 32 49 398 415
16 226 82 138 165 9 170 156 131 8 139 .077 0 -4.19 .303 41 18 15.333 18.257 .065 .055 .022 736 225 32 49 415 432 -4.19
17 224 82 153 169 13 169 156 131 11 142 .831 0 -3.809 .236 37 12 11.769 14.013 .085 .071 .196 766 225 32 49 432 449 -3.809
18 212 82 124 157 15 154 142 119 13 132 .009 0 -3.299 .228 39 16 8.267 9.843 .121 .102 .003 781 225 32 49 450 467 -3.299
19 235 98 141 160 17 154 143 120 14 134 .071 0 -3.304 .245 35 18 8.294 9.875 .121 .101 .014 746 225 33 50 468 485 -3.304
20 251 92 101 142 161 151 127 -8 119 .123 0 .188 32 8 .027 735 225 33 50 486 503

Total number of rows: 9216

Table truncated, full table size 1140 Kbytes.




Supplementary data files not provided
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