|
| Status |
Public on Sep 13, 2012 |
| Title |
USC_ChipSeq_H1-hESC_ZNF274_(M01)_UCDavis |
| Sample type |
SRA |
| |
|
| Source name |
H1-hESC
|
| Organism |
Homo sapiens |
| Characteristics |
lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H1-hESC
cell organism: human
cell description: embryonic stem cells
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
antibody: ZNF274_(M01)
antibody antibodydescription: Mouse monoclonal antibody raised against a partial recombinant ZNF274 (corresponding to amino acids 420-531 of the human ZNF274 protein). Antibody Target: ZNF274
antibody targetdescription: ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor and interacts with the KAP1 corepressor complex.
antibody vendorname: Abnova ZNF74
antibody vendorid: H00010782-M01
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH001751
labversion: PeakSeq1.0
|
| Biomaterial provider |
WiCell Research Institute
|
| Treatment protocol |
None
|
| Growth protocol |
missing
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (2) |
| GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX186624 |
| BioSample |
SAMN01174040 |
| Named Annotation |
GSM1003619_hg19_wgEncodeSydhTfbsH1hescZnf274m01UcdSig.bigWig |
