|
| Status |
Public on Jun 07, 2006 |
| Title |
MPI-187 |
| Sample type |
RNA |
| |
|
| Source name |
Frozen tissue
|
| Organism |
Homo sapiens |
| Characteristics |
sample.ID : MPI-187
Relapse: unk
Age : 3
Sex : female
Morphologic.diagnosis : DLBCL
CD20.expr. : present
CD10.expr. : absent
bcl2.expr. : present
Ki.67.score : 70
CD5.expr. : absent
bcl6.expr. : present
MYC.Partner : IG-MYC
BCL6.Break : present
IGH.BCL2.Fusion : absent
Chromosomal.Complexity.Score : 6
Genetic.Group : MYC.complex
AnnArbor.Stage : NA
Lesions : NA
B.Symptoms : NA
Survival.Status : NA
FollowupTime..months. : NA
Radiotherapy : NA
RITUXIMAB : NA
Response.to.treatment : NA
Chemotherapy : NA
Molecular.Diagnosis : intermediate
GCB.ABC.signature : GCB
Training.Test : Training
core.BL : no
BL.probability : 0.94
|
| Extracted molecule |
total RNA |
| Label |
Biotin
|
| |
|
| Description |
Mature aggressive B-cell lymphoma
|
| Data processing |
Probe level normalization was done using the calibration and variance stabilization method by Huber et al. (Bioinformatics 2002, PMID: 12169536). Probe-set summarization was performed using the median polish method on the normalized data (Irrizary et al. Nucleic Acids Research 2003, PMID: 12582260).
|
| |
|
| Submission date |
Mar 15, 2006 |
| Last update date |
Jun 07, 2006 |
| Contact name |
Michael Hummel |
| Organization name |
Universitätsmedizin Berlin, Campus Benjamin Franklin
|
| Department |
Institute of Pathology
|
| Street address |
Hindenburgdamm 30
|
| City |
Berlin |
| ZIP/Postal code |
12200 |
| Country |
Germany |
| |
|
| Platform ID |
GPL96 |
| Series (3) |
| GSE4475 |
A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling |
| GSE57611 |
HGU133A expression array data for diffuse large B cell lymphoma samples |
| GSE57612 |
Characterization of genomic imbalances in diffuse large B-cell lymphoma by high resolution SNP-chip analysis |
|
