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Sample GSM101398 Query DataSets for GSM101398
Status Public on Mar 21, 2007
Title Cmc03m012
Sample type RNA
 
Source name cultured endothelial cells from wildtype newborn mice
Organism Mus musculus
Characteristics endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin
Treatment protocol Mock-transfected control
Extracted molecule total RNA
Label biotin
 
Description Gene expression data from control endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Mar 22, 2006
Last update date Mar 22, 2006
Contact name Matthew Grow
Organization name Indiana University
Department Biochemistry and Molecular Biology
Lab Center for Medical Genomics
Street address 1345 W 16th St
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL1261
Series (1)
GSE4518 Divergent and Convergent Effects on Gene Expression and Function in Acute versus Chronic Endothelial Activation

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 789.3 P 0.00039
AFFX-BioB-M_at 1290.8 P 0.000052
AFFX-BioB-3_at 824.6 P 0.000052
AFFX-BioC-5_at 2728 P 0.000052
AFFX-BioC-3_at 3664.5 P 0.000052
AFFX-BioDn-5_at 5713.1 P 0.000044
AFFX-BioDn-3_at 10401.4 P 0.000052
AFFX-CreX-5_at 25643.9 P 0.000052
AFFX-CreX-3_at 39352.9 P 0.000044
AFFX-DapX-5_at 589.9 P 0.00011
AFFX-DapX-M_at 1841.2 P 0.000581
AFFX-DapX-3_at 4101 P 0.000052
AFFX-LysX-5_at 181.1 P 0.000052
AFFX-LysX-M_at 398.6 P 0.000081
AFFX-LysX-3_at 970.5 P 0.000094
AFFX-PheX-5_at 159.5 P 0.002867
AFFX-PheX-M_at 276.5 P 0.000297
AFFX-PheX-3_at 407.8 P 0.000044
AFFX-ThrX-5_at 106.4 M 0.050229
AFFX-ThrX-M_at 315.5 P 0.000195

Total number of rows: 45101

Table truncated, full table size 1218 Kbytes.




Supplementary data files not provided

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