|
| Status |
Public on Oct 18, 2006 |
| Title |
Expression data of CCMS_12 |
| Sample type |
RNA |
| |
|
| Source name |
Colorecal Cancer, Patient_12
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Colorecal Cancer
treatment response: FL_Responder
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
MSS, distal
Test-Lymph(-)
|
| Data processing |
Affymetrix Microarray Suite version 5.0
|
| |
|
| Submission date |
Mar 27, 2006 |
| Last update date |
Jan 20, 2010 |
| Contact name |
Toshiaki Watanabe |
| Phone |
81-3-5800-8653
|
| Organization name |
University of Tokyo
|
| Department |
Department of Surgical Oncology
|
| Street address |
7-3-1, Hongo
|
| City |
Bunkyo-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
113-8655 |
| Country |
Japan |
| |
|
| Platform ID |
GPL570 |
| Series (3) |
| GSE4459 |
Gene expression signature and the prediction of lymph node metastases |
| GSE4554 |
Gene expression signature of colorectal cancer with microsatellite instability. |
| GSE19860 |
Prediction of response to FOLFOX |
|
