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Sample GSM103103 Query DataSets for GSM103103
Status Public on May 01, 2007
Title AML cDNA hybridization-ID32-L
Sample type RNA
 
Source name ID32-L
Organism Homo sapiens
Characteristics Leukemic fractions of ID32 AML patient
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc).
Label biotin
Label protocol Biotinylated cDNA were prepared according to the Ovation Biotin RNA Amplification and Labeling System, NuGEN Technologies, Inc.
 
Hybridization protocol 2 ug of cDNA were hybridized for 18 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
Description Leukemic fractions of ID32 AML patient have been hybridized.
Data processing The mean value for the internal control probe sets (defined by Affymetrix) was set to be 500.
 
Submission date Apr 04, 2006
Last update date Feb 26, 2007
Contact name Hiroyuki Mano
E-mail(s) [email protected]
Phone +81-285-58-7449
Fax +81-285-44-7322
Organization name Jichi Medical University
Department Division of Functional Genomics
Street address 3311-1 Yakushiji
City Shimotsukeshi
State/province Tochigi
ZIP/Postal code 329-0498
Country Japan
 
Platform ID GPL570
Series (2)
GSE4608 AML mRNA hybridization to HGU133 Plus 2.0
GSE4610 AML hybridizations

Data table header descriptions
ID_REF
VALUE Expression intensity
ABS_CALL Absent call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 154.2 P
AFFX-BioB-M_at 276.6 P
AFFX-BioB-3_at 311 P
AFFX-BioC-5_at 353.2 P
AFFX-BioC-3_at 214.5 P
AFFX-BioDn-5_at 615.6 P
AFFX-BioDn-3_at 1569.6 P
AFFX-CreX-5_at 2633 P
AFFX-CreX-3_at 2476.5 P
AFFX-DapX-5_at 1.2 A
AFFX-DapX-M_at 0.1 A
AFFX-DapX-3_at 0.1 A
AFFX-LysX-5_at 0.7 A
AFFX-LysX-M_at 0.5 A
AFFX-LysX-3_at 0.2 A
AFFX-PheX-5_at 0.6 A
AFFX-PheX-M_at 0.2 A
AFFX-PheX-3_at 0.7 A
AFFX-ThrX-5_at 0 A
AFFX-ThrX-M_at 0.1 A

Total number of rows: 54675

Table truncated, full table size 904 Kbytes.




Supplementary data files not provided

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