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Sample GSM1056505 Query DataSets for GSM1056505
Status Public on Dec 18, 2013
Title CHC1380T
Sample type genomic
 
Source name CHC1380T
Organism Homo sapiens
Characteristics age: 44
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) [email protected]
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.1107 0.4732 20818 8088 1.362 0.987 2.349 0.399
rs1000002 -0.3398 0.5654 6580 3599 0.439 0.446 0.885 0.505
rs10000023 -0.2595 0.002 24711 680 1.63 0.06 1.69 0.023
rs1000003 0.0728 0.4888 11854 5314 0.795 0.661 1.456 0.442
rs10000030 -0.2297 1 174 2696 0.007 0.358 0.365 0.987
rs10000037 -0.0292 0.4994 7850 3910 0.571 0.514 1.084 0.467
rs10000041 -0.2222 0.0033 19297 608 1.419 0.055 1.475 0.025
rs10000042 -0.1223 1 621 6117 0.033 0.758 0.791 0.972
rs10000049 0.1704 0 21657 510 1.293 0.033 1.326 0.016
rs1000007 0.0448 0.4818 10042 5443 0.73 0.718 1.448 0.495
rs10000073 -0.2002 0 16108 249 0.96 0.007 0.967 0.005
rs10000081 -0.106 0.4886 7548 4197 0.493 0.512 1.005 0.512
rs10000092 -0.1233 0.9852 819 5127 0.048 0.634 0.682 0.952
rs10000105 0.0123 0.9889 1313 9131 0.065 1.057 1.121 0.961
rs10000119 0.1528 1 742 10822 0.034 1.345 1.379 0.984
rs10000124 -0.0019 0.9986 780 10921 0.036 1.357 1.393 0.983
rs10000154 0.0299 1 526 6508 0.026 0.807 0.833 0.979
rs1000016 0.0683 0.0108 9756 441 0.717 0.043 0.76 0.039
rs10000160 -0.0654 0.9991 679 5818 0.037 0.72 0.758 0.967
rs10000169 0.0953 0.4704 10866 5927 0.709 0.726 1.435 0.507

Total number of rows: 730525

Table truncated, full table size 40357 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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