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Sample GSM1068616 Query DataSets for GSM1068616
Status Public on Mar 05, 2013
Title B7_IL-10
Sample type RNA
 
Source name monocytes_IL-10
Organism Homo sapiens
Characteristics donor_id: 2
cell type: Peripheral blood monuclear cells
stimulated with: IL-10 (10ng/ml) for 24hr
Treatment protocol Peripheral blood monuclear cells derived through Ficoll-Hypaque from the blood of healthy human donors (n=4). Cells adhered to tissue culture treated 6-well plates for 2 hours in 1% Fetal Bovine Serum (FBS) RPMI and then stimulated by IL-10 (R&D Systems) 10ng/ml or media alone in 10% FBS RPMI for 24 hours at 37°C, 5% CO2.
Extracted molecule total RNA
Extraction protocol Trizol protocol for RNA isolation followed by purification of RNA by Qiagen Rneasy kit
Label biotin
Label protocol Performed by UCLA Clinical Microarray Core using Ambion Labeling kit
 
Hybridization protocol Performed by UCLA Clinical Microarray Core on Affymetrix Human Genome U133 Plus 2.0 Array
Scan protocol Performed by UCLA Clinical Microarray Core
Description B7
Data processing Dchip analysis and RMA normalization using DNA-Chip Analyzer (Build date: Feb 21 2010, www.dchip.org)
 
Submission date Jan 23, 2013
Last update date Mar 05, 2013
Contact name Dennis Jay Montoya
E-mail(s) [email protected]
Organization name UC Davis School of Medicine
Department Biochemistry and Molecular Medicine
Street address 2700 Stockton Blvd #2354
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
 
Platform ID GPL570
Series (1)
GSE43700 Microarray analysis of IL-10 stimulated adherent peripheral blood mononuclear cells

Data table header descriptions
ID_REF
VALUE RMA normalized
call

Data table
ID_REF VALUE call
AFFX-BioB-5_at 280.98 P
AFFX-BioB-M_at 371.78 P
AFFX-BioB-3_at 254.45 P
AFFX-BioC-5_at 663.48 P
AFFX-BioC-3_at 780.08 P
AFFX-BioDn-5_at 1354.4 P
AFFX-BioDn-3_at 2672.81 P
AFFX-CreX-5_at 9429.71 P
AFFX-CreX-3_at 9246.43 P
AFFX-DapX-5_at 36.47 P
AFFX-DapX-M_at 163.64 P
AFFX-DapX-3_at 198.96 P
AFFX-LysX-5_at 20.72 P
AFFX-LysX-M_at 17.68 A
AFFX-LysX-3_at 60.67 A
AFFX-PheX-5_at 29.94 A
AFFX-PheX-M_at 17.37 A
AFFX-PheX-3_at 48.01 A
AFFX-ThrX-5_at 2.32 A
AFFX-ThrX-M_at 23.68 P

Total number of rows: 54675

Table truncated, full table size 1007 Kbytes.




Supplementary file Size Download File type/resource
GSM1068616_B7.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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