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Sample GSM1068618 Query DataSets for GSM1068618
Status Public on Mar 05, 2013
Title C7_IL-10
Sample type RNA
 
Source name monocytes_IL-10
Organism Homo sapiens
Characteristics donor_id: 3
cell type: Peripheral blood monuclear cells
stimulated with: IL-10 (10ng/ml) for 24hr
Treatment protocol Peripheral blood monuclear cells derived through Ficoll-Hypaque from the blood of healthy human donors (n=4). Cells adhered to tissue culture treated 6-well plates for 2 hours in 1% Fetal Bovine Serum (FBS) RPMI and then stimulated by IL-10 (R&D Systems) 10ng/ml or media alone in 10% FBS RPMI for 24 hours at 37°C, 5% CO2.
Extracted molecule total RNA
Extraction protocol Trizol protocol for RNA isolation followed by purification of RNA by Qiagen Rneasy kit
Label biotin
Label protocol Performed by UCLA Clinical Microarray Core using Ambion Labeling kit
 
Hybridization protocol Performed by UCLA Clinical Microarray Core on Affymetrix Human Genome U133 Plus 2.0 Array
Scan protocol Performed by UCLA Clinical Microarray Core
Description C7
Data processing Dchip analysis and RMA normalization using DNA-Chip Analyzer (Build date: Feb 21 2010, www.dchip.org)
 
Submission date Jan 23, 2013
Last update date Mar 05, 2013
Contact name Dennis Jay Montoya
E-mail(s) [email protected]
Organization name UC Davis School of Medicine
Department Biochemistry and Molecular Medicine
Street address 2700 Stockton Blvd #2354
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
 
Platform ID GPL570
Series (1)
GSE43700 Microarray analysis of IL-10 stimulated adherent peripheral blood mononuclear cells

Data table header descriptions
ID_REF
VALUE RMA normalized
call

Data table
ID_REF VALUE call
AFFX-BioB-5_at 373.89 P
AFFX-BioB-M_at 503.25 P
AFFX-BioB-3_at 377.44 P
AFFX-BioC-5_at 850.17 P
AFFX-BioC-3_at 1038.28 P
AFFX-BioDn-5_at 1758.8 P
AFFX-BioDn-3_at 3140.6 P
AFFX-CreX-5_at 10965.22 P
AFFX-CreX-3_at 10915.31 P
AFFX-DapX-5_at 43.19 P
AFFX-DapX-M_at 283.52 P
AFFX-DapX-3_at 331.94 P
AFFX-LysX-5_at 36.14 A
AFFX-LysX-M_at 25.4 A
AFFX-LysX-3_at 92.02 P
AFFX-PheX-5_at 45.27 A
AFFX-PheX-M_at 20.25 A
AFFX-PheX-3_at 43.87 P
AFFX-ThrX-5_at 10.82 A
AFFX-ThrX-M_at 27.77 P

Total number of rows: 54675

Table truncated, full table size 1007 Kbytes.




Supplementary file Size Download File type/resource
GSM1068618_C7.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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