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Sample GSM110388

Query DataSets for GSM110388

Status

Public on Sep 24, 2006

Title

wsb 10167

Sample type

RNA

Channel 1

Source name

breast carcinoma

Organism

Homo sapiens

Characteristics

female, <51years at diagnosis, breastcancer, diameter <5cm, treated by breast conserving therapy.
Co-hybridized with reference pool of over 100 breast cancer samples.

Extracted molecule

total RNA

Label

cye3/cye5

Channel 2

Source name

breast carcinoma

Organism

Homo sapiens

Characteristics

female, <51years at diagnosis, breastcancer, diameter <5cm, treated by breast conserving therapy.
Co-hybridized with reference pool of over 100 breast cancer samples.

Extracted molecule

total RNA

Label

cye5/cye3

Description

All our samples are co-hybridized with a reference of pooled RNA from over 100 breast cancer samples.
We perform a dye-swap experiment and the VALUE-ratios are the ratios after normalisation and combining the two experiments.
The ratios are log2 transformed.

Data processing

For detailed information see: http://microarrays.nki.nl/

Submission date

May 24, 2006

Last update date

Aug 16, 2006

Contact name

Bas Kreike

E-mail(s)

[email protected]

Phone

0031205122117

Fax

0031205122759

Organization name

Netherlands Cancer Institute

Department

Radiotherapy

Lab

Experimental therapy

Street address

Plesmanlaan 121

City

Amsterdam

ZIP/Postal code

1066 CX

Country

Netherlands

Platform ID

GPL3558

Series (1)

GSE4913

Gene expression profiling of primary breast carcinomas from patients at high risk for local recurrence

Data table header descriptions
ID_REF
VALUE	10167 prim

Data table
ID_REF	VALUE
1	0.2891156
2	0.08824337
3	0.006124464
4	0.09742652
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20

Total number of rows: 19200

Table truncated, full table size 295 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM110388_1_Green.txt.gz	3.8 Mb	(ftp)(http)	TXT
GSM110388_1_Red.txt.gz	3.8 Mb	(ftp)(http)	TXT
GSM110388_Green.txt.gz	3.8 Mb	(ftp)(http)	TXT
GSM110388_Red.txt.gz	3.8 Mb	(ftp)(http)	TXT