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Sample GSM1120066 Query DataSets for GSM1120066
Status Public on Jan 30, 2014
Title Ctrl PGC rep2
Sample type RNA
 
Source name Ctrl PGC rep2
Organism Mus musculus
Characteristics cell type: PGC
genotype/variation: control
Extracted molecule total RNA
Extraction protocol RNA was extracted from ESCs and sorted PGCLCs using the RNeasy Mini Kit (Qiagen, Hilden, Germany)
Label biotin
Label protocol According to the manufacturer's recommendations.
 
Hybridization protocol According to the manufacturer's recommendations.
Scan protocol The arrays were washed and stained according to the manufacturer's recommendations and scanned in a GeneChip scanner 3000 (Affymetrix, Santa Clara, CA, USA).
Description replicate 2
Data processing CEL files were processed using the BioConductor software package (www.bioconductor.org). Normalization was done employing GCRMA (Wu et al., Journal of American Statistical Association, 99(468), 909-917, 2004). Scatter plots were performed using in-house developed functions in Matlab.
 
Submission date Apr 10, 2013
Last update date Jan 15, 2022
Contact name Marcos J. Araúzo-Bravo
E-mail(s) [email protected]
Phone +34 943 00 6108
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bionformatics
Street address Rogentstrasse
City Muenster
ZIP/Postal code 48149
Country Germany
 
Platform ID GPL1261
Series (1)
GSE45941 Transcription factor TFAP2C regulates major programs required for murine fetal germ cell maintenance and haploinsufficiency predisposes to teratomas in male mice

Data table header descriptions
ID_REF
VALUE GCRMA normalized signal

Data table
ID_REF VALUE
1415670_at 8.158205
1415671_at 8.717588
1415672_at 9.800006
1415673_at 7.488819
1415674_a_at 7.925020
1415675_at 7.470435
1415676_a_at 10.817563
1415677_at 6.220071
1415678_at 8.422534
1415679_at 8.924029
1415680_at 8.161610
1415681_at 8.323460
1415682_at 6.498697
1415683_at 9.851549
1415684_at 7.907321
1415685_at 8.578323
1415686_at 7.446222
1415687_a_at 8.988846
1415688_at 8.698827
1415689_s_at 6.910667

Total number of rows: 45101

Table truncated, full table size 899 Kbytes.




Supplementary file Size Download File type/resource
GSM1120066_Ctrl-PGC2.CEL.gz 2.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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