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GEO accession:
Sample GSM115950
Query DataSets for GSM115950
Status
Public on Jul 07, 2006
Title
Adult rat testis-normal 2
Sample type
RNA
Source name
Testis
Organism
Rattus norvegicus
Characteristics
normal adult rat testis
Extracted molecule
total RNA
Extraction protocol
0.1 gram of frozen testis tissue extracted using Trizol (Invitrogen) and followed by RNeasy cleanup (Qiagen)
Label
biotin
Label protocol
5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
normal adult rat testis
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 22, 2006
Last update date
Jun 23, 2006
Contact name
Weiliang Xia
E-mail(s)
[email protected]
Phone
212-327-8738
Fax
212-327-8733
Organization name
Population Council
Street address
1230 York Avenue
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL1355
Series (1)
GSE5131
Adjudin-induced germ cell loss from adult rat testes
Data table header descriptions
ID_REF
Name of Affymetrix probe set
VALUE
normalized signal intensities by MAS5
ABS-CALL
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS-CALL
DETECTION P-VALUE
AFFX-BioB-5_at
256.9
P
0.000754
AFFX-BioB-M_at
618
P
0.000147
AFFX-BioB-3_at
283.2
P
0.000095
AFFX-BioC-5_at
650.5
P
0.000052
AFFX-BioC-3_at
528.6
P
0.000052
AFFX-BioDn-5_at
836.8
P
0.00007
AFFX-BioDn-3_at
3201.1
P
0.00007
AFFX-CreX-5_at
6571
P
0.000044
AFFX-CreX-3_at
8170.4
P
0.000044
AFFX-DapX-5_at
87.4
P
0.000581
AFFX-DapX-M_at
157.6
P
0.001796
AFFX-DapX-3_at
206.9
P
0.000509
AFFX-LysX-5_at
12.6
P
0.021902
AFFX-LysX-M_at
22.2
A
0.327079
AFFX-LysX-3_at
55.2
P
0.000662
AFFX-PheX-5_at
10.9
A
0.13134
AFFX-PheX-M_at
5.5
A
0.425962
AFFX-PheX-3_at
35.8
A
0.123572
AFFX-ThrX-5_at
41.4
P
0.006187
AFFX-ThrX-M_at
54.9
P
0.011384
Total number of rows:
31099
Table truncated, full table size
823 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM115950.CEL.gz
4.5 Mb
(ftp)
(http)
CEL
GSM115950.EXP.gz
500 b
(ftp)
(http)
EXP
Processed data included within Sample table
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