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Sample GSM115954 Query DataSets for GSM115954
Status Public on Jul 07, 2006
Title Testis from adult rat treated with 50 mg/kg b.w. Adjudin 4 d-1
Sample type RNA
 
Source name Testis
Organism Rattus norvegicus
Characteristics Adult rats were treated with 50 mg/kg b.w. Adjudin [1-(2,4-dichlorobenzyl)-indazole-3-carbohydrazide] by gavage for 4 days
Extracted molecule total RNA
Extraction protocol 0.1 gram of frozen testis tissue extracted using Trizol (Invitrogen) and followed by RNeasy cleanup (Qiagen)
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description normal adult rat testis
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jun 22, 2006
Last update date Jun 23, 2006
Contact name Weiliang Xia
E-mail(s) [email protected]
Phone 212-327-8738
Fax 212-327-8733
Organization name Population Council
Street address 1230 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL1355
Series (1)
GSE5131 Adjudin-induced germ cell loss from adult rat testes

Data table header descriptions
ID_REF Name of Affymetrix probe set
VALUE normalized signal intensities by MAS5
ABS-CALL
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS-CALL DETECTION P-VALUE
AFFX-BioB-5_at 277.4 P 0.000754
AFFX-BioB-M_at 536.4 P 0.00006
AFFX-BioB-3_at 262.8 P 0.000044
AFFX-BioC-5_at 658.9 P 0.000052
AFFX-BioC-3_at 601.1 P 0.000052
AFFX-BioDn-5_at 873.8 P 0.000052
AFFX-BioDn-3_at 3228.6 P 0.00007
AFFX-CreX-5_at 6613.6 P 0.000052
AFFX-CreX-3_at 8491.8 P 0.000044
AFFX-DapX-5_at 131 P 0.00007
AFFX-DapX-M_at 207.4 P 0.001102
AFFX-DapX-3_at 291.6 P 0.000169
AFFX-LysX-5_at 25.8 P 0.006187
AFFX-LysX-M_at 27.7 M 0.054213
AFFX-LysX-3_at 49.8 P 0.000195
AFFX-PheX-5_at 19.5 P 0.009337
AFFX-PheX-M_at 19.8 A 0.089459
AFFX-PheX-3_at 38.3 M 0.054198
AFFX-ThrX-5_at 44.2 P 0.003212
AFFX-ThrX-M_at 52 P 0.001591

Total number of rows: 31099

Table truncated, full table size 824 Kbytes.




Supplementary file Size Download File type/resource
GSM115954.CEL.gz 4.4 Mb (ftp)(http) CEL
GSM115954.EXP.gz 494 b (ftp)(http) EXP
Processed data included within Sample table

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