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GEO accession:
Sample GSM120190
Query DataSets for GSM120190
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-115
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 115 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 115 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
-0.045260362
0.901030779
FALSE
-0.045260362
E. coli control
23.86569595
TRUE
1.377774119
empty
27.64662743
TRUE
1.441642165
Human Control
-0.034670666
0.923271298
FALSE
-0.034670666
Lambda Control
0.059726022
1.147429586
FALSE
0.059726022
n1
0.024508271
1.058055043
FALSE
0.024508271
n2
0.024061726
1.056967735
FALSE
0.024061726
p1
0.00873121
1.020307779
FALSE
0.00873121
p2
0.012462028
1.029110551
FALSE
0.012462028
Phi174 Control
-0.409648955
0.389359742
FALSE
-0.409648955
YAL001C
-0.016646503
0.96239531
FALSE
-0.016646503
YAL002W
-0.067621894
0.855811477
FALSE
-0.067621894
YAL003W
0.039030895
1.094034195
FALSE
0.039030895
YAL004W
-0.063156143
0.864656985
FALSE
-0.063156143
YAL005C
0.025880178
1.061402679
FALSE
0.025880178
YAL007C
-0.001337203
0.996925712
FALSE
-0.001337203
YAL008W
0.060581576
1.149692178
FALSE
0.060581576
YAL009W
0.047202896
1.114815235
FALSE
0.047202896
YAL010C
1.197067142
TRUE
0.078118511
YAL011W
-0.081868224
0.828193426
FALSE
-0.081868224
Total number of rows:
6228
Table truncated, full table size
306 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120190.gpr.gz
482.9 Kb
(ftp)
(http)
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