GEO help: Mouse over screen elements for information.
Status
Public on Aug 10, 2006
Title
IMR389ds
Sample type
genomic
Channel 1 Source name
Sample_IMR389
Organism
Homo sapiens Characteristics
Sample_IMR389
Biomaterial provider
Sam Knight, UK
Extracted molecule
genomic DNA
Extraction protocol
Phenol-chloroform extraction
Label
cy5
Label protocol
PMID: 15918152
Channel 2 Source name
GM15724
Organism
Homo sapiens Characteristics
Lymphoblastoid cell line GM15724
Biomaterial provider
Coriell Depositoryhttp://locus.umdnj.edu/nigms/nigms_cgi/display.cgi?GM15724
Growth protocol
Grown as per Coriell recommendations
Extracted molecule
genomic DNA
Extraction protocol
Gentra Puregene DNA Isolation system
Label
cy3
Label protocol
PMID: 15918152
Hybridization protocol
PMID: 15918152
Scan protocol
Slides scanned with ArrayWorX scanner. Image analysis and normalization were performed using UCSF Spot and Sproc software (Jain AN, Tokuyasu TA, Snijders AM, Segraves R, Albertson DG, Pinkel D (2002) Fully automatic quantification of microarray image data. Genome Res 12:325-332)
Description
BACs for which only one of the triplicates printed on the array yielded data, or for which the standard deviation of log2 ratio for the triplicates was >0.2, were removed from final analysis.
Data processing
Default parameters within Spot software
Submission date
Jul 21, 2006
Last update date
Aug 09, 2006
Contact name
Andrew Sharp
E-mail(s)
[email protected] Phone
(+1) 206 616 5117
Fax
(+1) 206 685 7301
Organization name
University of Washington
Department
Genome Sciences
Lab
Eichler Lab, HSB K360
Street address
1705 NE Pacific St
City
Seattle
State/province
WA
ZIP/Postal code
98195
Country
USA
Platform ID
GPL4010 Series (1)
GSE5373 Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome
Data table header descriptions ID_REF VALUE Normalized mean log2 ratio for triplicate spots of that clone on the array
Data table ID_REF VALUE HS7E10
0.208046
HS5F7
-0.025492
HS2C10
0.036448
HS15C8
HS21H10
0.056947
HS13E4
0.18918
HS21D9
0.249149
HS15E4
-0.141513
HS11F5
0.098693
HS21E9
0.176166
HS17E12
0.083644
HS23D3
HS7G11
0.044813
HS13B4
0.042558
HS2G2
0.094387
HS11C11
0.075217
HS2B7
0.038596
HS12D8
0.035555
HS13C7
-0.053304
HS5B8
-0.027438
2043 31 Kbytes .Supplementary file Size Download File type/resource GSM122699.txt.gz
752.5 Kb
(ftp) (http) TXT
