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GEO accession:
Sample GSM123793
Query DataSets for GSM123793
Status
Public on Oct 01, 2006
Title
8-I
Sample type
RNA
Source name
experimental malaria-infected
Organism
Homo sapiens
Characteristics
Malaria, Human, PBMC, in vivo
Extracted molecule
total RNA
Label
biotin
Description
experimental malaria-infected
Data processing
The data were analyzed with MAS5.0 using Affymetrix default settings.
Submission date
Jul 28, 2006
Last update date
Dec 13, 2011
Contact name
Maryanne Vahey
E-mail(s)
[email protected]
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL96
Series (1)
GSE5418
Gene Expression Analysis in Malaria Infection
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
5980.3
P
0.000060
AFFX-BioB-M_at
15769.6
P
0.000044
AFFX-BioB-3_at
8159.2
P
0.000052
AFFX-BioC-5_at
28832.5
P
0.000044
AFFX-BioC-3_at
19528.6
P
0.000044
AFFX-BioDn-5_at
10466.7
P
0.000044
AFFX-BioDn-3_at
41480.7
P
0.000052
AFFX-CreX-5_at
8.0
A
0.996408
AFFX-CreX-3_at
105.9
A
0.659339
AFFX-DapX-5_at
181.4
A
0.139482
AFFX-DapX-M_at
74.4
A
0.514890
AFFX-DapX-3_at
78.6
A
0.783476
AFFX-LysX-5_at
55.9
A
0.645547
AFFX-LysX-M_at
118.6
A
0.440646
AFFX-LysX-3_at
198.6
A
0.195266
AFFX-PheX-5_at
241.1
A
0.227636
AFFX-PheX-M_at
11.1
A
0.969024
AFFX-PheX-3_at
43.9
A
0.824672
AFFX-ThrX-5_at
32.6
A
0.937071
AFFX-ThrX-M_at
154.1
A
0.382599
Total number of rows:
22283
Table truncated, full table size
603 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM123793.cel.gz
3.1 Mb
(ftp)
(http)
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