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Sample GSM123996 Query DataSets for GSM123996
Status Public on Dec 31, 2006
Title Muscle_control_rep1
Sample type RNA
 
Source name Muscle, control, sample 1
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol None
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed and tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 7.8 A 0.986189
AFFX-MurIL10_at 26.7 A 0.354453
AFFX-MurIL4_at 17 A 0.425962
AFFX-MurFAS_at 31.6 A 0.250796
AFFX-BioB-5_at 229.2 P 0.002275
AFFX-BioB-M_at 323.7 P 0.000446
AFFX-BioB-3_at 168.6 P 0.004998
AFFX-BioC-5_at 679.5 P 0.000095
AFFX-BioC-3_at 485.1 P 0.000147
AFFX-BioDn-5_at 528.7 P 0.000095
AFFX-BioDn-3_at 2594.6 P 0.000147
AFFX-CreX-5_at 5366.9 P 0.000044
AFFX-CreX-3_at 9361.8 P 0.000044
AFFX-BioB-5_st 34.8 A 0.39692
AFFX-BioB-M_st 40.1 A 0.617401
AFFX-BioB-3_st 18.6 A 0.804734
AFFX-BioC-5_st 10.9 A 0.916408
AFFX-BioC-3_st 6.1 A 0.814869
AFFX-BioDn-5_st 31.1 A 0.275146
AFFX-BioDn-3_st 121.3 A 0.102165

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary data files not provided

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