NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM124008 Query DataSets for GSM124008
Status Public on Dec 31, 2006
Title Muscle_freeze_7d_rep440
Sample type RNA
 
Source name Muscle, freeze injury, 7 days post-injury, sample 440
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured using 6-mm diameter steel probe cooled to temperature of dry ice; applied for 10 seconds
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 7-days post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 5.7 A 0.916408
AFFX-MurIL10_at 29.1 A 0.382599
AFFX-MurIL4_at 22.2 A 0.131361
AFFX-MurFAS_at 23.5 A 0.147939
AFFX-BioB-5_at 182 P 0.00034
AFFX-BioB-M_at 261.9 P 0.000052
AFFX-BioB-3_at 155.1 P 0.000169
AFFX-BioC-5_at 584.5 P 0.00006
AFFX-BioC-3_at 449.6 P 0.000044
AFFX-BioDn-5_at 498.3 P 0.000044
AFFX-BioDn-3_at 2896.6 P 0.000081
AFFX-CreX-5_at 5360.6 P 0.000044
AFFX-CreX-3_at 8779.8 P 0.000044
AFFX-BioB-5_st 13.3 A 0.340661
AFFX-BioB-M_st 35.1 A 0.275146
AFFX-BioB-3_st 9.7 A 0.645547
AFFX-BioC-5_st 2.7 A 0.941556
AFFX-BioC-3_st 2.8 A 0.749204
AFFX-BioDn-5_st 49.5 M 0.058444
AFFX-BioDn-3_st 68.4 M 0.058428

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap