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Sample GSM131348 Query DataSets for GSM131348
Status Public on Jan 08, 2007
Title AtGen_6-4412_Droughtstress-Shoots-6.0h_Rep2
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Shoots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Drought stress, Group Kudla. The plants were stressed by 15 min. dry air stream (clean bench) until 10% loss of fresh weight; then incubation in closed vessels in the climate chamber.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5624 AtGenExpress: Stress Treatments (Drought stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.33578833007812E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 4.05224072265625E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 4.51171417236328E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 7.27524230957031E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 2.05762710571289E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 2.18867904663086E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.05030586242676E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 8.85816955566406E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 8.88024902343750E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 1.15826344490051E+000 A 9.53857004642487E-001
AFFX-r2-Bs-thr-5_s_at 6.41785860061646E+000 A 2.19482004642487E-001
AFFX-r2-Bs-thr-3_s_at 1.20253527164459E+000 A 8.28612983226776E-001
AFFX-r2-Bs-phe-M_at 4.39042180776596E-001 A 6.65526986122131E-001
AFFX-r2-Bs-phe-5_at 8.31946194171906E-001 A 6.01073980331421E-001
AFFX-r2-Bs-phe-3_at 6.50319337844849E+000 A 1.71387001872063E-001
AFFX-r2-Bs-lys-M_at 5.58349370956421E-001 A 4.32372987270355E-001
AFFX-r2-Bs-lys-5_at 2.45204877853394E+000 A 3.98925989866257E-001
AFFX-r2-Bs-lys-3_at 4.88539695739746E+000 A 2.74170011281967E-001
AFFX-r2-Bs-dap-M_at 7.92846918106079E-001 A 6.33789002895355E-001
AFFX-r2-Bs-dap-5_at 3.80349087715149E+000 A 5.33936023712158E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131348.CEL.gz 2.2 Mb (ftp)(http) CEL

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