NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1331864 Query DataSets for GSM1331864
Status Public on Jan 01, 2015
Title BENIGN PHYLLODES TUMOR [20130319_205635510814_05-15311-A3_02.RCC]
Sample type RNA
 
Source name Tumor
Organism Homo sapiens
Characteristics age: NA
tumor size: NA
rfs event: NA
rfs time: NA
pam50: Normal
pam50+claudin-low: Normal
ror-s score: 2.56472995675446
ror-s groups: low
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from macrodissected FFPE tissue using ROCHE High Pure FFPE Kit
Label NA
Label protocol RNA was not labeled; instead, RNA (100 ng/ul) was pre-processed following the NanoString manufacturer's protocol by VHIO´s Translational Genomics Group
 
Hybridization protocol RNA was hybridized to capture probes and detection probes using the NanoString nCounter system according to the manufacturer's protocol. Detection probes were provided by the manufacturer and were labeled with a proprietary fluorescent barcode system
Scan protocol Scanning was conducted using the NanoString confocal microscope scanner/Digital Analyzer according to manufacturer's instructions
Data processing The data were normalized using 5 HK genes. Raw values are the number of copies of a feature-specific molecular barcode that is attached to a detection probe and counted by a confocal system
 
Submission date Feb 20, 2014
Last update date Jan 01, 2015
Contact name Aleix Prat
E-mail(s) [email protected]
Organization name VHIO
Department Translational Genomics
Street address Passeig Vall d´Hebron 119
City Barcelona
ZIP/Postal code 08035
Country Spain
 
Platform ID GPL17071
Series (1)
GSE55224 A Gene Expression-based Predictor of Fibroepithelial Lesions of the Breast

Data table header descriptions
ID_REF
VALUE normalized data

Data table
ID_REF VALUE
2 -4.541993282
3 -4.31960086
4 -3.957030781
5 -7.126955782
6 -6.126955782
7 -4.126955782
8 -3.039492941
9 -4.805027687
10 -2.483099593
11 -3.541993282
12 -5.126955782
13 -5.126955782
14 0.509668838
15 -6.126955782
16 -5.541993282
17 -2.483099593
18 -5.126955782
19 -3.31960086
20 -2.31960086
21 -2.426516064

Total number of rows: 105

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap