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Sample GSM1356376 Query DataSets for GSM1356376
Status Public on Jun 15, 2014
Title m4 mouse skin epithelium 4
Sample type RNA
 
Source name mouse tail epithelium
Organism Mus musculus
Characteristics tissue: mouse tail epithelium
age: 6-8 weeks
genotype: Balb/c
Treatment protocol Four female Balb/c mice were sacrificed and skin epidermal tissues were obtained from the tail of mice, and oral epidermal tissues were obtained from the hard palate. Epithelium was separated from the dermis by 0.2% dispase treatment for 2 hrs at room temperature.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the whole epithelial sheets using TriZol and purified by RNeasy kit. The integrity (18S/28S) and concentrations of RNA was determined using an Experion per the manufacturer’s instruction.
Label biotin
Label protocol Affymetrix 3 IVT standard labeling protocol
 
Hybridization protocol Affymetrix standard wash protocol
Scan protocol Affymetrix standard protocol
Data processing RMA
 
Submission date Mar 24, 2014
Last update date Jun 15, 2014
Contact name Zarema H Arbieva
E-mail(s) [email protected]
Phone 312-355-1608
Organization name UIC
Department RRC
Lab Core Genomics Laboratory
Street address 835 S. Wolcott A301
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL1261
Series (1)
GSE56135 Intrinsic differences between oral and skin keratinocytes

Data table header descriptions
ID_REF
VALUE log 2 signal intensity

Data table
ID_REF VALUE
1453279_x_at 5.18444
1437344_x_at 4.53342
1449488_at 5.08624
1416967_at 3.1966
1439527_at 4.51755
1422454_at 4.4008
1455848_at 4.00238
1429334_at 4.21546
1429001_at 8.06599
1416368_at 10.1437
1429727_at 8.4398
1418176_at 10.3008
1419437_at 3.75469
1417782_at 9.56518
1441863_x_at 3.85915
1436237_at 4.61866
1434708_at 7.35002
1424797_a_at 4.1955
1419665_a_at 10.9076
1427196_at 5.69165

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM1356376_LAD042209-m4-Mouse430.2-051209.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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