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Sample GSM136560 Query DataSets for GSM136560
Status Public on Jun 05, 2007
Title Microarray analysis of NL and PCOS oocytes (P4)
Sample type RNA
 
Source name MII arrested oocyte
Organism Homo sapiens
Characteristics MII-arrested oocyte collected from a PCOS woman undergoing gonadotropin-releasing hormone (GnRH) analog/ recombinant human (rh) follicle stimulating hormone (FSH) therapy for IVF. A MII oocyte was defined by one polar body in the perivitelline space and no visible nuclear structure in the cytoplasm
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
 
Description Previous microarray analyses have demonstrated that whole ovaries and isolated theca cells from normal and PCOS women have unique gene expression profiles. PCOS follicles have elevated androgen levels before and after GnRH analog/rhFSH therapy for IVF and contain excess amounts of insulin that are positively correlated with adiposity. Taken together, these studies suggest that the altered PCOS hormonal milieu and/or intrinsic abnormalities might alter gene expression in the PCOS oocyte which could impact oocyte developmental competence. To this end, we compared the gene expression profiles of normal and PCOS oocytes using Affymetrix microarray chips.
Data processing MAS5.0
 
Submission date Sep 15, 2006
Last update date Aug 28, 2018
Contact name Jennifer R Wood
E-mail(s) [email protected]
Phone 402-472-6437
Fax 402-472-6362
Organization name University of Nebraska
Department Animal Science
Lab Wood
Street address 3800 Fair St.
City Lincoln
State/province NE
ZIP/Postal code 68583-0908
Country USA
 
Platform ID GPL570
Series (1)
GSE5850 Microarray analysis of NL and PCOS oocytes
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE fluorescence intensity normalized to TGT150
ABS_CALL Present, Absent, or Marginal Call
DETECTION P-VALUE statistical analysis of detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1718.5 P 0.000044
AFFX-BioB-M_at 2750.1 P 0.000044
AFFX-BioB-3_at 2197.4 P 0.000052
AFFX-BioC-5_at 4822.6 P 0.000052
AFFX-BioC-3_at 2699.3 P 0.000044
AFFX-BioDn-5_at 4395.7 P 0.000044
AFFX-BioDn-3_at 16088.3 P 0.000044
AFFX-CreX-5_at 41961 P 0.000052
AFFX-CreX-3_at 45431.8 P 0.000044
AFFX-DapX-5_at 6.7 A 0.603089
AFFX-DapX-M_at 3 A 0.987453
AFFX-DapX-3_at 20.6 A 0.783476
AFFX-LysX-5_at 20.3 A 0.340661
AFFX-LysX-M_at 13.8 A 0.544591
AFFX-LysX-3_at 2.9 A 0.883887
AFFX-PheX-5_at 27.5 A 0.51489
AFFX-PheX-M_at 44.3 A 0.108979
AFFX-PheX-3_at 5.4 A 0.749204
AFFX-ThrX-5_at 7.4 A 0.772364
AFFX-ThrX-M_at 8.1 A 0.5

Total number of rows: 54675

Table truncated, full table size 1404 Kbytes.




Supplementary file Size Download File type/resource
GSM136560.CEL.gz 7.5 Mb (ftp)(http) CEL
GSM136560.EXP.gz 368 b (ftp)(http) EXP
Processed data included within Sample table

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