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| Status |
Public on Apr 12, 2016 |
| Title |
RSq03_33_alpha |
| Sample type |
SRA |
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| Source name |
pancreas_alpha
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| Organism |
Homo sapiens |
| Characteristics |
tissue: pancreas
cell type: alpha
age group: old
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| Extracted molecule |
total RNA |
| Extraction protocol |
ABI picopure RNA extraction kit.
Illumina HiSeq/TruSeq.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
RSq03
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| Data processing |
Raw reads were mapped to hg19 transcriptome using STAR version 2.3.0.1.
Genome_build: hg19 transcriptome, aggregated from UCSC, RefSeq and GENCODE v12 databases.
Supplementary_files_format_and_content: STAR_sorted_rpkm.txt: The processed data file contains 30 columns: the first column is transcript ID, second column is gene symbol and columns that come after are the RPKM counts of the respective samples.
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| Submission date |
May 27, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Seung Kim |
| E-mail(s) |
[email protected]
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| Organization name |
Stanford University
|
| Department |
Developmental Biology
|
| Lab |
Seung Kim Lab
|
| Street address |
279 Campus Dr B303
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
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| Platform ID |
GPL11154 |
| Series (2) |
| GSE57973 |
Age-dependent gene expression changes in human islets |
| GSE79469 |
Age-dependent pancreatic gene regulation reveals mechanisms governing human β-cell function |
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| Relations |
| BioSample |
SAMN02799776 |
| SRA |
SRX553338 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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