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Sample GSM1403574 Query DataSets for GSM1403574
Status Public on Jan 31, 2015
Title BreastTumor_OSL2U-0080T1
Sample type RNA
 
Source name Breast primary tumor
Organism Homo sapiens
Characteristics tissue: Breast tumor
estrogen receptor (er) status: NA
human epidermal growth factor receptor 2 (her2) status: NA
histological grade: NA
pam50 subgroup: Normal
rppa subgroup: NA
Treatment protocol Fresh frozen in liquid nitrogen
Growth protocol Human primary tumors
Extracted molecule total RNA
Extraction protocol TRIzol, following manufactors protocol
Label Cy3
Label protocol Agilent miRNA Labeling Reagent and Hybridization Kit, Protocol v.2.3.
 
Hybridization protocol Agilent miRNA Labeling Reagent and Hybridization Kit, Protocol v.2.3.
Scan protocol Scanning on Agilent scanner G2565A and Feature Extraction (FE) v10.7.3.1 was used to extract signals
Data processing Signals were extracted using Feature Extraction v10.7.3.1 and the subsequent data processing was performed using the GeneSpring software v11.0 (Agilent Technologies). In brief, the miRNA signal intensities were log2-transformed and normalized to the 90th percentile, and miRNAs that were detected in less than 10% of the samples were excluded. This resulted in 421 unique mature miRNAs.
 
Submission date Jun 04, 2014
Last update date Jan 31, 2015
Contact name Miriam Ragle Aure
E-mail(s) [email protected]
Phone +47 22781363
Organization name Oslo University Hospital Radiumhospitalet
Department Dept. of Cancer Genetics
Street address Ullernchauséen 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platform ID GPL10656
Series (4)
GSE58210 Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer [miRNA]
GSE58215 Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer
GSE81000 Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome

Data table header descriptions
ID_REF
VALUE Log2-transformed and normalized to the 90th percentile

Data table
ID_REF VALUE
hsa-let-7a 2.9932456
hsa-let-7a* -10.781496
hsa-let-7b 4.2526097
hsa-let-7c 2.0412507
hsa-let-7d 0.15742874
hsa-let-7d* -10.781496
hsa-let-7e 0.5972514
hsa-let-7f 2.0600038
hsa-let-7g 1.4033971
hsa-let-7i 2.2879148
hsa-miR-1 -10.781496
hsa-miR-100 0
hsa-miR-101 -0.05182028
hsa-miR-103 1.8776183
hsa-miR-106b 0.80701494
hsa-miR-107 1.3113799
hsa-miR-10a -1.3565874
hsa-miR-10b -0.69214153
hsa-miR-10b* -10.781496
hsa-miR-1180 -5.324129

Total number of rows: 421

Table truncated, full table size 9 Kbytes.




Supplementary file Size Download File type/resource
GSM1403574_240611_252929710387_S01_miRNA_107_Sep09_patch_2_1.txt.gz 1.7 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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